| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is irgA [H]
Identifier: 103487897
GI number: 103487897
Start: 2554011
End: 2556482
Strand: Reverse
Name: irgA [H]
Synonym: Sala_2417
Alternate gene names: 103487897
Gene position: 2556482-2554011 (Counterclockwise)
Preceding gene: 103487899
Following gene: 103487895
Centisome position: 76.42
GC content: 63.19
Gene sequence:
>2472_bases ATGAAGAAATTGCTTCGCACGAGTGGCTCGATTATCGCCGTCCTGGCAGGCATGTCGGCCGCCGCCGCCTTCGCGCAGGA TAACGCCAAAGAGGCGCCGGGGCCAGGCGCGTCGCAGGGCGAAATCGTCGTGACGGGTACGCGGCGGAACGATCTCAAGG CGGCCGATTCCGCTCAGCCGATCGACATCATCACCGGTGCCGAACTGCTCGAAAAGGGCACGGCCGACATGAATGATCTC CTGCGCACCGAGGTCCCGTCGCTCAATGTCCAGCGCCTCGTCAGCAACGACGGCGCCGTTTTTACCCGGCCTTTCTCGCT GCGCGGCCTGCCGCCGGACCAGACGCTGGTGCTCGTGAATGGCAAGCGGCGCCATCGCGGCGCGACGGTCCAGTTCACCA ATGTTCCCTATATCCGGGGATCGCAGGGACCCGATCTTTCGGCGATCCCGTCGATCGCGATCGGCCAGCTCGAGGTTCTG CGTGACGGCGCGTCGGCGCTCTATGGATCGGATGCGATCGCCGGCGTCCTCAATTTCGGTCTGCGCCGCGACCGCGAAGG CGGATTGCTGATCGCCCGCTATGGCCAATTCTATAAGGGCGACGGCGAGGATTTCCTCGTCCAGGGCAATGTCGGGCTTC CCTTCACCGACGCCGGTTTCGTCAACATCAGCGGCGAATATGTGAACGCCAGCACGACGTCGCGCGGCATTCAGCGTCCC GACGCGCAGGCGCTCATCGATGCCGGCGTTCAGGATGTCCCGGTCCCGGCGCAGCGCTGGGGAAATCCCGAATCCGAGGC GGCGCGCATCTTCGTCAATGCCGGCATCGAACTGTCGGAGGAGATGGAATTCTACACCTTCGGCAACTATAGCTGGAGCC GCGGCACGACGGCCTTCTTTTACCGCAACCCCGATGCCAGCTTCATTTCCACCTCGATTCCGCTCACCAATACGCCCGGA GGACAGCGGTTCAGCTTCCGCCAGCTCTTTCCCGGCGGTTTCACCCCGGATTTCGGTGCCACGGTGACCGATGCGGCGCT GGCGGCCGGCCTCAAGGGCGAATTCTCCTCGGGCCTGACCTATGACCTCAGCGCTTCCTATGGTCAGAACCATGCTTCCT ACCGGATCGAAAATACGGTCAATCCGTCGCTTGGCCTCGCGTCGCCGACCTCCTTCAAGCCGGGGCAGCTCGAGCAGCGC GAACTCGCTTTCAATCTCGATCTCACTTACCCCATCGCGATCGGCACCTCCGATCCGCTGACGCTTGCAGGCGGTCTCGA GTATCGGCGCGAGACATATGAGATCACGGCCGGCGACATCGCATCATGGCAGGTTGGTCCTTTCGCGTCGGTCATCGATC CCGATACCGGAAACCGCGTCGGACTGCCGGTCGGCTCGAACGGCTTCCCGGGCTTCAGTCCCATCCAGGCGGGCGAGTTC GCGCGCAGCAACTGGGCCGCCTATACGTCGCTCGAAGGCAATCTCACCGACGCGCTCCAGTTCGGCCTTGCCGGCCGCTA CGAGAATTACTCGGACTTCGGCTCGAAATTCACCTGGAAGATCAACGGGCGATATGATTTCTCGGACGTCTTCGCGGTGC GCGGATCGGTCAACACCGGCTTTCGGGCGCCGACGCCGGGCCAGTCGAACGCCTCGCAGGTCCAGACCAACATCGACTCG ATAACCGGGGCGCCGCTGACCGCAGGCATTATCGCGCCCAACAATCCGGTGGCGCAATTCTTCGGCGCGACGCCGCTTCG GCCCGAGAATTCGTTCAACGTCGCCGGCGGCATCGTGGTGAAGCCCTCCAATCGCATCACCTTCACGCTCGACTATTTCA ACATCAAGGTCGAAGACCGGATCGCCGTATCGGGCAATTTCAATCTCACCCCGGCGCAGCGTGCGCAGCTCGCGGCGCTT GGCATTCCCGGTGGGGATTCCTTCCAGCAGGTGAGCTTCTTCACCAATTCCTTCGACAGCCGCACCCAGGGCGTCGATGC GGTGCTCACCGTGGGCTTCGACCTCGGCGACGGCAAGGCCACGCTCGGCCTCAACGGCAACTATACCAAAACCGATGTCA TCAAGGCCTCGCCGGTGATCACTGCGGACCGCGAGCGGCTGCTCGAACTCGAGGGCTTCGTTCCGAAGTGGAAGGGCAAT GCGTCCTTCACTTATGCGGGCGAGCGCTTCGGCTTCGTCGCGCGCGCGAACTATTATGGCAAATGGACCGACTATGGCGC CGCACCGGCTGCCGACCAGACGGGCGGCGCCGAACTGCTGGTCGATCTCGAGCTGTCCTACAAGGTTAGCGACATGCTCA AGCTCGCGGTCGGCGGCGAGAATATCTTCGACAATTACCCCGACGTCGAGGCGCGGCAATCCCAGATCAACAACGGGATC CGATATCTCCGCTTCGCGCCGACGGGGTTCAACGGGGGCTTCTGGTACGTCCGCGCGACCGCCTCCTTCTGA
Upstream 100 bases:
>100_bases TCTCGTTTATAGCGATGAGTGGTGATTATTTCTGGTCATGCCAAGGCCGCGAAGATAGCTCGGTGGCGAAGCCGAGAGCT TTCGCAAATGGGAGGGGACC
Downstream 100 bases:
>100_bases TCGGTGGCCGTGAGGGCCGTGCGGCGTCTTGTGTCTTCAGCTGGCGTCGGAGCCGAACATCGCGTCGCGGTGGGATTCGA GCACCGCGATAAAGGCCGCA
Product: TonB-dependent receptor, plug
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 823
Protein sequence:
>823_residues MKKLLRTSGSIIAVLAGMSAAAAFAQDNAKEAPGPGASQGEIVVTGTRRNDLKAADSAQPIDIITGAELLEKGTADMNDL LRTEVPSLNVQRLVSNDGAVFTRPFSLRGLPPDQTLVLVNGKRRHRGATVQFTNVPYIRGSQGPDLSAIPSIAIGQLEVL RDGASALYGSDAIAGVLNFGLRRDREGGLLIARYGQFYKGDGEDFLVQGNVGLPFTDAGFVNISGEYVNASTTSRGIQRP DAQALIDAGVQDVPVPAQRWGNPESEAARIFVNAGIELSEEMEFYTFGNYSWSRGTTAFFYRNPDASFISTSIPLTNTPG GQRFSFRQLFPGGFTPDFGATVTDAALAAGLKGEFSSGLTYDLSASYGQNHASYRIENTVNPSLGLASPTSFKPGQLEQR ELAFNLDLTYPIAIGTSDPLTLAGGLEYRRETYEITAGDIASWQVGPFASVIDPDTGNRVGLPVGSNGFPGFSPIQAGEF ARSNWAAYTSLEGNLTDALQFGLAGRYENYSDFGSKFTWKINGRYDFSDVFAVRGSVNTGFRAPTPGQSNASQVQTNIDS ITGAPLTAGIIAPNNPVAQFFGATPLRPENSFNVAGGIVVKPSNRITFTLDYFNIKVEDRIAVSGNFNLTPAQRAQLAAL GIPGGDSFQQVSFFTNSFDSRTQGVDAVLTVGFDLGDGKATLGLNGNYTKTDVIKASPVITADRERLLELEGFVPKWKGN ASFTYAGERFGFVARANYYGKWTDYGAAPAADQTGGAELLVDLELSYKVSDMLKLAVGGENIFDNYPDVEARQSQINNGI RYLRFAPTGFNGGFWYVRATASF
Sequences:
>Translated_823_residues MKKLLRTSGSIIAVLAGMSAAAAFAQDNAKEAPGPGASQGEIVVTGTRRNDLKAADSAQPIDIITGAELLEKGTADMNDL LRTEVPSLNVQRLVSNDGAVFTRPFSLRGLPPDQTLVLVNGKRRHRGATVQFTNVPYIRGSQGPDLSAIPSIAIGQLEVL RDGASALYGSDAIAGVLNFGLRRDREGGLLIARYGQFYKGDGEDFLVQGNVGLPFTDAGFVNISGEYVNASTTSRGIQRP DAQALIDAGVQDVPVPAQRWGNPESEAARIFVNAGIELSEEMEFYTFGNYSWSRGTTAFFYRNPDASFISTSIPLTNTPG GQRFSFRQLFPGGFTPDFGATVTDAALAAGLKGEFSSGLTYDLSASYGQNHASYRIENTVNPSLGLASPTSFKPGQLEQR ELAFNLDLTYPIAIGTSDPLTLAGGLEYRRETYEITAGDIASWQVGPFASVIDPDTGNRVGLPVGSNGFPGFSPIQAGEF ARSNWAAYTSLEGNLTDALQFGLAGRYENYSDFGSKFTWKINGRYDFSDVFAVRGSVNTGFRAPTPGQSNASQVQTNIDS ITGAPLTAGIIAPNNPVAQFFGATPLRPENSFNVAGGIVVKPSNRITFTLDYFNIKVEDRIAVSGNFNLTPAQRAQLAAL GIPGGDSFQQVSFFTNSFDSRTQGVDAVLTVGFDLGDGKATLGLNGNYTKTDVIKASPVITADRERLLELEGFVPKWKGN ASFTYAGERFGFVARANYYGKWTDYGAAPAADQTGGAELLVDLELSYKVSDMLKLAVGGENIFDNYPDVEARQSQINNGI RYLRFAPTGFNGGFWYVRATASF >Mature_823_residues MKKLLRTSGSIIAVLAGMSAAAAFAQDNAKEAPGPGASQGEIVVTGTRRNDLKAADSAQPIDIITGAELLEKGTADMNDL LRTEVPSLNVQRLVSNDGAVFTRPFSLRGLPPDQTLVLVNGKRRHRGATVQFTNVPYIRGSQGPDLSAIPSIAIGQLEVL RDGASALYGSDAIAGVLNFGLRRDREGGLLIARYGQFYKGDGEDFLVQGNVGLPFTDAGFVNISGEYVNASTTSRGIQRP DAQALIDAGVQDVPVPAQRWGNPESEAARIFVNAGIELSEEMEFYTFGNYSWSRGTTAFFYRNPDASFISTSIPLTNTPG GQRFSFRQLFPGGFTPDFGATVTDAALAAGLKGEFSSGLTYDLSASYGQNHASYRIENTVNPSLGLASPTSFKPGQLEQR ELAFNLDLTYPIAIGTSDPLTLAGGLEYRRETYEITAGDIASWQVGPFASVIDPDTGNRVGLPVGSNGFPGFSPIQAGEF ARSNWAAYTSLEGNLTDALQFGLAGRYENYSDFGSKFTWKINGRYDFSDVFAVRGSVNTGFRAPTPGQSNASQVQTNIDS ITGAPLTAGIIAPNNPVAQFFGATPLRPENSFNVAGGIVVKPSNRITFTLDYFNIKVEDRIAVSGNFNLTPAQRAQLAAL GIPGGDSFQQVSFFTNSFDSRTQGVDAVLTVGFDLGDGKATLGLNGNYTKTDVIKASPVITADRERLLELEGFVPKWKGN ASFTYAGERFGFVARANYYGKWTDYGAAPAADQTGGAELLVDLELSYKVSDMLKLAVGGENIFDNYPDVEARQSQINNGI RYLRFAPTGFNGGFWYVRATASF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88111; Mature: 88111
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLRTSGSIIAVLAGMSAAAAFAQDNAKEAPGPGASQGEIVVTGTRRNDLKAADSAQP CCCHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC IDIITGAELLEKGTADMNDLLRTEVPSLNVQRLVSNDGAVFTRPFSLRGLPPDQTLVLVN EEEEECHHHHHCCCCCHHHHHHHCCCCCCHHHHHCCCCEEEECCEEECCCCCCCEEEEEC GKRRHRGATVQFTNVPYIRGSQGPDLSAIPSIAIGQLEVLRDGASALYGSDAIAGVLNFG CCCCCCCCEEEECCCCEEECCCCCCCCCCCCCHHCHHHHHHCCHHHHCCCHHHHHHHHHH LRRDREGGLLIARYGQFYKGDGEDFLVQGNVGLPFTDAGFVNISGEYVNASTTSRGIQRP HCCCCCCCEEEEECCCEECCCCCCEEEECCCCCCCCCCCEEEECCCEEECCCCCCCCCCC DAQALIDAGVQDVPVPAQRWGNPESEAARIFVNAGIELSEEMEFYTFGNYSWSRGTTAFF CHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEEECCCEECCCEEEEEECCCCCCCCCEEEE YRNPDASFISTSIPLTNTPGGQRFSFRQLFPGGFTPDFGATVTDAALAAGLKGEFSSGLT EECCCCCEEEECCCCCCCCCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE YDLSASYGQNHASYRIENTVNPSLGLASPTSFKPGQLEQRELAFNLDLTYPIAIGTSDPL EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCE TLAGGLEYRRETYEITAGDIASWQVGPFASVIDPDTGNRVGLPVGSNGFPGFSPIQAGEF EEECCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCH ARSNWAAYTSLEGNLTDALQFGLAGRYENYSDFGSKFTWKINGRYDFSDVFAVRGSVNTG HCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHCCCEEEEEECCEECCCEEEEEECCCCCC FRAPTPGQSNASQVQTNIDSITGAPLTAGIIAPNNPVAQFFGATPLRPENSFNVAGGIVV CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCEECCEEEE KPSNRITFTLDYFNIKVEDRIAVSGNFNLTPAQRAQLAALGIPGGDSFQQVSFFTNSFDS CCCCCEEEEEEEEEEEEECEEEECCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHCCCCC RTQGVDAVLTVGFDLGDGKATLGLNGNYTKTDVIKASPVITADRERLLELEGFVPKWKGN HHCCCEEEEEEEEEECCCCEEEECCCCCCCCEEEECCCEEECCHHHHHHHHCCCCCCCCC ASFTYAGERFGFVARANYYGKWTDYGAAPAADQTGGAELLVDLELSYKVSDMLKLAVGGE CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHEEEEEECCC NIFDNYPDVEARQSQINNGIRYLRFAPTGFNGGFWYVRATASF HHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECC >Mature Secondary Structure MKKLLRTSGSIIAVLAGMSAAAAFAQDNAKEAPGPGASQGEIVVTGTRRNDLKAADSAQP CCCHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC IDIITGAELLEKGTADMNDLLRTEVPSLNVQRLVSNDGAVFTRPFSLRGLPPDQTLVLVN EEEEECHHHHHCCCCCHHHHHHHCCCCCCHHHHHCCCCEEEECCEEECCCCCCCEEEEEC GKRRHRGATVQFTNVPYIRGSQGPDLSAIPSIAIGQLEVLRDGASALYGSDAIAGVLNFG CCCCCCCCEEEECCCCEEECCCCCCCCCCCCCHHCHHHHHHCCHHHHCCCHHHHHHHHHH LRRDREGGLLIARYGQFYKGDGEDFLVQGNVGLPFTDAGFVNISGEYVNASTTSRGIQRP HCCCCCCCEEEEECCCEECCCCCCEEEECCCCCCCCCCCEEEECCCEEECCCCCCCCCCC DAQALIDAGVQDVPVPAQRWGNPESEAARIFVNAGIELSEEMEFYTFGNYSWSRGTTAFF CHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEEECCCEECCCEEEEEECCCCCCCCCEEEE YRNPDASFISTSIPLTNTPGGQRFSFRQLFPGGFTPDFGATVTDAALAAGLKGEFSSGLT EECCCCCEEEECCCCCCCCCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE YDLSASYGQNHASYRIENTVNPSLGLASPTSFKPGQLEQRELAFNLDLTYPIAIGTSDPL EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCE TLAGGLEYRRETYEITAGDIASWQVGPFASVIDPDTGNRVGLPVGSNGFPGFSPIQAGEF EEECCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCH ARSNWAAYTSLEGNLTDALQFGLAGRYENYSDFGSKFTWKINGRYDFSDVFAVRGSVNTG HCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHCCCEEEEEECCEECCCEEEEEECCCCCC FRAPTPGQSNASQVQTNIDSITGAPLTAGIIAPNNPVAQFFGATPLRPENSFNVAGGIVV CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCEECCEEEE KPSNRITFTLDYFNIKVEDRIAVSGNFNLTPAQRAQLAALGIPGGDSFQQVSFFTNSFDS CCCCCEEEEEEEEEEEEECEEEECCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHCCCCC RTQGVDAVLTVGFDLGDGKATLGLNGNYTKTDVIKASPVITADRERLLELEGFVPKWKGN HHCCCEEEEEEEEEECCCCEEEECCCCCCCCEEEECCCEEECCHHHHHHHHCCCCCCCCC ASFTYAGERFGFVARANYYGKWTDYGAAPAADQTGGAELLVDLELSYKVSDMLKLAVGGE CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHEEEEEECCC NIFDNYPDVEARQSQINNGIRYLRFAPTGFNGGFWYVRATASF HHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]