| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is btuB [H]
Identifier: 103487891
GI number: 103487891
Start: 2544777
End: 2547482
Strand: Reverse
Name: btuB [H]
Synonym: Sala_2411
Alternate gene names: 103487891
Gene position: 2547482-2544777 (Counterclockwise)
Preceding gene: 103487892
Following gene: 103487890
Centisome position: 76.15
GC content: 62.45
Gene sequence:
>2706_bases ATGATGACCAGGACAATTTTGCTCGCCAGCGCCGCAGCGGTCGCCACTTTTGCAACACCCGCGCTCGCGCAGAGCGGTGC CGCGACGCAGTCACCCGCCGCCGAGGATGCTCCGAACGGATCGGACATCGTCGTGACCGGCTCGCGCATCCGCCGCCAGG ACCTCGCAGGCGTCGGCCCGGCGACCGTCGTGTCGGCCGAGCAGATCGAGAACACCGGCGTCGTCAATATCGAGACGGTG CTGCAGCGCTTGCCGGCCAACGCCGGTTTCGCGGGCAACCAGACGTCGGCCTATTGGGCGAACAATGGATATGGCACGGC GCAGGTGAACCTGCGCGGTCTCGGCATCAAGCGCACCCTCGTCCTGCTCAACGGCCGCCGCCTCGTCGCGGGCGGCACCG GGGCGAACTCCTCGCCCGACCTCAACATGATTCCCGTCGCGGCGCTCGCACGCACCGATGTGCTCAAGGACGGCGCCTCG GCAATCTATGGCGCCGACGCGATGGCGGGTGTCGTCAACCTTGTAACGCGCACCGACTATGAAGGTCTCGGCCTCAGCGT GCGCCAAGGCATCACCGAAAAGGGCGATGGCTCGGACTTCACCGCCGACCTCCTGTGGGGCGTCCGCAACGATCGCGGCG GTTTCATGGCGGCGGTCACCTATCAGAAGACGAGCGCGGTCAATATGGCAACGCGCGCGCCTTGCTCGCTTGCCGAAACC ACGCCCGGCATGCTGAGCTGCGTGAACAGCGCCTCGACGATCGGCGGCCGCGCGGTGCTGCCGAACGGCCAGCAGATCAA CTTCAATCAGGTGCTGGGCGGTAACGGCAACTTCTTCGAGCCGTACAGCGCTGCCAAGCACAACTTCAACTCGAACCCGT TCCTCAACGCGGTGAGCCCGGTCGAGCGCGTGAGCACGGCGTTTTTCGCCGACTATGACATCACTGACAATATCGAGGCG TTCGGCGAATTCCTTTACACCTTCCGCAAGTCGAATCAGATCGCGACGCCCGGAACGCTGCGCAACCTCTCGATCGCGGC GAGCAATCCCACCAATCCGACGGGGCAGAATATCGTCCTCATCCAGCGCCGCCTCGCCGAGCCCGGCCCGCGCCAATTCT TCCAGGAAACCGATACCTGGCAGGGTACGTTTGGCCTCCGCGGCAAGCTCTCGAACGATTGGGGATGGGAAATCGCGGGC GCCTTCGGCCGCAACACCGCGGTCGATGGTTCGACCAACATCGCCAATCTCGAGCGAGTGGCGAATTCCCTCGATACGAC CAAGTGCAGTCTTGCTGCCGGTGCCACGATCCCCTGCGCCGACTATCTCGGGTTCGGCGACCTGACCCCGGAGGTTCTCG ACTATATCCTGTTCACGTCGCGCGACCGCGGCGGCAACGAGCTTGCGACGGTCACCGCCGATATCAACGGCGATCTCTTC AAGCTGCCCGCAGGCCCCGTCTCCTTCGCGGCGGGTGTCGTCTATCGCAAGGAAAAGGGTTGGCGCGATCCCGATCCGCT GACGGTGCTCGGTATTGCCAACACCAACCAGCAGGATCCGATCTCCGGAACGAGCACGGCGAAGGAAGCCTATCTCGAAC TGTCGGTGCCCGTTCTGGCCGACACACCCTTCTTCCAGTCGCTTACCCTCGACGGCGCGGTTCGCTACTCGAACTACGAC CTGTTCGGCAGCGACTGGAACTACAAGGGGAGCGTCGACTGGGTCATCAATGACAGCTTCCGCCTGCGCGGCACCTACGG CACCGGCTTTCGCATTCCGAACGTCCCCGAATTGTTCGGCGGCGTCTCCGAGGGCAATCTGACGACCACCGACCCCTGCT CGCGCTATTCGACCAGCGGCAATGCGACACTGATCGCCAATTGTCAGGCGTCGGGCGTGCCGGCCAATTATGTTCAGCTC GGTACAACGATCCTGACAACGGTCGGCGGCAACGAGAATCTGAAACCCGAAAGCTCGACGACCTGGACCGTCGGGACGGT GATTTCACCGAAGGGACTGGTTCCGGGACTCTCGCTCACTGCCGACTGGTTCGACATCAAGATCAAGGATGCGATCCGTG CTATTCCGGGCTCGACAAAGCTCAGCATTTGTTATGCGAGCCAGAATCTTTCGCATCCCTTCTGCGAAGATTTTACCCGC AGCCCGTTGACCGGCGAGGTTACCTTCCTCTCCGCGCAACCGATCAACACGGGCCGCGAAGAAATGAACGGCCTCGATCT GGGTCTCGTTTACAACAATGACATCGGCAGCGTGAACGTCTCGCTCGACGTCAACGTGACCTATCTCAACAAATATGTGG TCCTGCCTTTCCCCGGCGGCGCGCCGATCGACTTCGACGGCTTTATCGGCGGCGGCAATGGCGGCTATCCGAAATGGCGC GGCTATGGCGTGCTGACCGCTGAAAAGGACGGGGTCAGCGCGACCTGGTCGACCCAGTGGATCGGCAAGGCGACCGACTT CAATGCGGCCCCCGGCGACATCGGCTACAGCACGCCGAATGTCTTCTACCACAATCTCCAGGTCGCTTTCGAAATCGACG AGAAGACCCGGTTCCAGGTCGGTGTCGACAATCTTTTCGATCGCAAGGCGCCCTATATCCAGAGCTTCACCGATGCGAAC ACCGACACGATGACCTATGACCTGCTCGGACGGCGTTTCTACGTCGGCTTCCGCACCGCGTTCTGA
Upstream 100 bases:
>100_bases ACTTCATAACCAATTGATATGATTCAATAAATTCTTATTGACCTGTATATACATTTGATGCTCTCTGAGGGGAATCAGCC AACCATCAGGGGGTTTCGCT
Downstream 100 bases:
>100_bases GGGTAATCGATATGGCGATCCGTTGGCCGCTGCTCGTCCGGCGAACGCATAAATGGCTGGCCTTGGTGGTCGGCGTCCAG GCGCTGCTCTGGACGCTGAC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 901; Mature: 901
Protein sequence:
>901_residues MMTRTILLASAAAVATFATPALAQSGAATQSPAAEDAPNGSDIVVTGSRIRRQDLAGVGPATVVSAEQIENTGVVNIETV LQRLPANAGFAGNQTSAYWANNGYGTAQVNLRGLGIKRTLVLLNGRRLVAGGTGANSSPDLNMIPVAALARTDVLKDGAS AIYGADAMAGVVNLVTRTDYEGLGLSVRQGITEKGDGSDFTADLLWGVRNDRGGFMAAVTYQKTSAVNMATRAPCSLAET TPGMLSCVNSASTIGGRAVLPNGQQINFNQVLGGNGNFFEPYSAAKHNFNSNPFLNAVSPVERVSTAFFADYDITDNIEA FGEFLYTFRKSNQIATPGTLRNLSIAASNPTNPTGQNIVLIQRRLAEPGPRQFFQETDTWQGTFGLRGKLSNDWGWEIAG AFGRNTAVDGSTNIANLERVANSLDTTKCSLAAGATIPCADYLGFGDLTPEVLDYILFTSRDRGGNELATVTADINGDLF KLPAGPVSFAAGVVYRKEKGWRDPDPLTVLGIANTNQQDPISGTSTAKEAYLELSVPVLADTPFFQSLTLDGAVRYSNYD LFGSDWNYKGSVDWVINDSFRLRGTYGTGFRIPNVPELFGGVSEGNLTTTDPCSRYSTSGNATLIANCQASGVPANYVQL GTTILTTVGGNENLKPESSTTWTVGTVISPKGLVPGLSLTADWFDIKIKDAIRAIPGSTKLSICYASQNLSHPFCEDFTR SPLTGEVTFLSAQPINTGREEMNGLDLGLVYNNDIGSVNVSLDVNVTYLNKYVVLPFPGGAPIDFDGFIGGGNGGYPKWR GYGVLTAEKDGVSATWSTQWIGKATDFNAAPGDIGYSTPNVFYHNLQVAFEIDEKTRFQVGVDNLFDRKAPYIQSFTDAN TDTMTYDLLGRRFYVGFRTAF
Sequences:
>Translated_901_residues MMTRTILLASAAAVATFATPALAQSGAATQSPAAEDAPNGSDIVVTGSRIRRQDLAGVGPATVVSAEQIENTGVVNIETV LQRLPANAGFAGNQTSAYWANNGYGTAQVNLRGLGIKRTLVLLNGRRLVAGGTGANSSPDLNMIPVAALARTDVLKDGAS AIYGADAMAGVVNLVTRTDYEGLGLSVRQGITEKGDGSDFTADLLWGVRNDRGGFMAAVTYQKTSAVNMATRAPCSLAET TPGMLSCVNSASTIGGRAVLPNGQQINFNQVLGGNGNFFEPYSAAKHNFNSNPFLNAVSPVERVSTAFFADYDITDNIEA FGEFLYTFRKSNQIATPGTLRNLSIAASNPTNPTGQNIVLIQRRLAEPGPRQFFQETDTWQGTFGLRGKLSNDWGWEIAG AFGRNTAVDGSTNIANLERVANSLDTTKCSLAAGATIPCADYLGFGDLTPEVLDYILFTSRDRGGNELATVTADINGDLF KLPAGPVSFAAGVVYRKEKGWRDPDPLTVLGIANTNQQDPISGTSTAKEAYLELSVPVLADTPFFQSLTLDGAVRYSNYD LFGSDWNYKGSVDWVINDSFRLRGTYGTGFRIPNVPELFGGVSEGNLTTTDPCSRYSTSGNATLIANCQASGVPANYVQL GTTILTTVGGNENLKPESSTTWTVGTVISPKGLVPGLSLTADWFDIKIKDAIRAIPGSTKLSICYASQNLSHPFCEDFTR SPLTGEVTFLSAQPINTGREEMNGLDLGLVYNNDIGSVNVSLDVNVTYLNKYVVLPFPGGAPIDFDGFIGGGNGGYPKWR GYGVLTAEKDGVSATWSTQWIGKATDFNAAPGDIGYSTPNVFYHNLQVAFEIDEKTRFQVGVDNLFDRKAPYIQSFTDAN TDTMTYDLLGRRFYVGFRTAF >Mature_901_residues MMTRTILLASAAAVATFATPALAQSGAATQSPAAEDAPNGSDIVVTGSRIRRQDLAGVGPATVVSAEQIENTGVVNIETV LQRLPANAGFAGNQTSAYWANNGYGTAQVNLRGLGIKRTLVLLNGRRLVAGGTGANSSPDLNMIPVAALARTDVLKDGAS AIYGADAMAGVVNLVTRTDYEGLGLSVRQGITEKGDGSDFTADLLWGVRNDRGGFMAAVTYQKTSAVNMATRAPCSLAET TPGMLSCVNSASTIGGRAVLPNGQQINFNQVLGGNGNFFEPYSAAKHNFNSNPFLNAVSPVERVSTAFFADYDITDNIEA FGEFLYTFRKSNQIATPGTLRNLSIAASNPTNPTGQNIVLIQRRLAEPGPRQFFQETDTWQGTFGLRGKLSNDWGWEIAG AFGRNTAVDGSTNIANLERVANSLDTTKCSLAAGATIPCADYLGFGDLTPEVLDYILFTSRDRGGNELATVTADINGDLF KLPAGPVSFAAGVVYRKEKGWRDPDPLTVLGIANTNQQDPISGTSTAKEAYLELSVPVLADTPFFQSLTLDGAVRYSNYD LFGSDWNYKGSVDWVINDSFRLRGTYGTGFRIPNVPELFGGVSEGNLTTTDPCSRYSTSGNATLIANCQASGVPANYVQL GTTILTTVGGNENLKPESSTTWTVGTVISPKGLVPGLSLTADWFDIKIKDAIRAIPGSTKLSICYASQNLSHPFCEDFTR SPLTGEVTFLSAQPINTGREEMNGLDLGLVYNNDIGSVNVSLDVNVTYLNKYVVLPFPGGAPIDFDGFIGGGNGGYPKWR GYGVLTAEKDGVSATWSTQWIGKATDFNAAPGDIGYSTPNVFYHNLQVAFEIDEKTRFQVGVDNLFDRKAPYIQSFTDAN TDTMTYDLLGRRFYVGFRTAF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=162, Percent_Identity=29.0123456790123, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1790405, Length=150, Percent_Identity=34, Blast_Score=70, Evalue=7e-13, Organism=Escherichia coli, GI1786798, Length=177, Percent_Identity=27.683615819209, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 96049; Mature: 96049
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTRTILLASAAAVATFATPALAQSGAATQSPAAEDAPNGSDIVVTGSRIRRQDLAGVGP CCCEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCC ATVVSAEQIENTGVVNIETVLQRLPANAGFAGNQTSAYWANNGYGTAQVNLRGLGIKRTL HHEEEHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEEECCEEEEE VLLNGRRLVAGGTGANSSPDLNMIPVAALARTDVLKDGASAIYGADAMAGVVNLVTRTDY EEEECCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCC EGLGLSVRQGITEKGDGSDFTADLLWGVRNDRGGFMAAVTYQKTSAVNMATRAPCSLAET CCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHCCCCCHHHC TPGMLSCVNSASTIGGRAVLPNGQQINFNQVLGGNGNFFEPYSAAKHNFNSNPFLNAVSP CCHHHHHHHCHHHCCCEEECCCCCEEEHHEEECCCCCCCCCHHHHHCCCCCCCCCCCCCH VERVSTAFFADYDITDNIEAFGEFLYTFRKSNQIATPGTLRNLSIAASNPTNPTGQNIVL HHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEE IQRRLAEPGPRQFFQETDTWQGTFGLRGKLSNDWGWEIAGAFGRNTAVDGSTNIANLERV EEHHHCCCCHHHHHHCCCCCCCCEEECEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH ANSLDTTKCSLAAGATIPCADYLGFGDLTPEVLDYILFTSRDRGGNELATVTADINGDLF HHHCCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCEE KLPAGPVSFAAGVVYRKEKGWRDPDPLTVLGIANTNQQDPISGTSTAKEAYLELSVPVLA ECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEECCEEE DTPFFQSLTLDGAVRYSNYDLFGSDWNYKGSVDWVINDSFRLRGTYGTGFRIPNVPELFG CCCCHHEEEECCEEEECCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHC GVSEGNLTTTDPCSRYSTSGNATLIANCQASGVPANYVQLGTTILTTVGGNENLKPESST CCCCCCEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHCEEEEEEECCCCCCCCCCCC TWTVGTVISPKGLVPGLSLTADWFDIKIKDAIRAIPGSTKLSICYASQNLSHPFCEDFTR EEEEEEEECCCCCCCCCEEEECEEEEEEHHHHHHCCCCCEEEEEEECCCCCCHHHHHHCC SPLTGEVTFLSAQPINTGREEMNGLDLGLVYNNDIGSVNVSLDVNVTYLNKYVVLPFPGG CCCCCEEEEEECCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCC APIDFDGFIGGGNGGYPKWRGYGVLTAEKDGVSATWSTQWIGKATDFNAAPGDIGYSTPN CCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC VFYHNLQVAFEIDEKTRFQVGVDNLFDRKAPYIQSFTDANTDTMTYDLLGRRFYVGFRTA EEEEEEEEEEEECCCCEEEECHHHHHHCCCCCHHHHCCCCCCEEEHHHHCCEEEEEEEEC F C >Mature Secondary Structure MMTRTILLASAAAVATFATPALAQSGAATQSPAAEDAPNGSDIVVTGSRIRRQDLAGVGP CCCEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCC ATVVSAEQIENTGVVNIETVLQRLPANAGFAGNQTSAYWANNGYGTAQVNLRGLGIKRTL HHEEEHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEEECCEEEEE VLLNGRRLVAGGTGANSSPDLNMIPVAALARTDVLKDGASAIYGADAMAGVVNLVTRTDY EEEECCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCC EGLGLSVRQGITEKGDGSDFTADLLWGVRNDRGGFMAAVTYQKTSAVNMATRAPCSLAET CCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHCCCCCHHHC TPGMLSCVNSASTIGGRAVLPNGQQINFNQVLGGNGNFFEPYSAAKHNFNSNPFLNAVSP CCHHHHHHHCHHHCCCEEECCCCCEEEHHEEECCCCCCCCCHHHHHCCCCCCCCCCCCCH VERVSTAFFADYDITDNIEAFGEFLYTFRKSNQIATPGTLRNLSIAASNPTNPTGQNIVL HHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEE IQRRLAEPGPRQFFQETDTWQGTFGLRGKLSNDWGWEIAGAFGRNTAVDGSTNIANLERV EEHHHCCCCHHHHHHCCCCCCCCEEECEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHH ANSLDTTKCSLAAGATIPCADYLGFGDLTPEVLDYILFTSRDRGGNELATVTADINGDLF HHHCCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCEE KLPAGPVSFAAGVVYRKEKGWRDPDPLTVLGIANTNQQDPISGTSTAKEAYLELSVPVLA ECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEECCEEE DTPFFQSLTLDGAVRYSNYDLFGSDWNYKGSVDWVINDSFRLRGTYGTGFRIPNVPELFG CCCCHHEEEECCEEEECCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHC GVSEGNLTTTDPCSRYSTSGNATLIANCQASGVPANYVQLGTTILTTVGGNENLKPESST CCCCCCEECCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHCEEEEEEECCCCCCCCCCCC TWTVGTVISPKGLVPGLSLTADWFDIKIKDAIRAIPGSTKLSICYASQNLSHPFCEDFTR EEEEEEEECCCCCCCCCEEEECEEEEEEHHHHHHCCCCCEEEEEEECCCCCCHHHHHHCC SPLTGEVTFLSAQPINTGREEMNGLDLGLVYNNDIGSVNVSLDVNVTYLNKYVVLPFPGG CCCCCEEEEEECCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCC APIDFDGFIGGGNGGYPKWRGYGVLTAEKDGVSATWSTQWIGKATDFNAAPGDIGYSTPN CCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC VFYHNLQVAFEIDEKTRFQVGVDNLFDRKAPYIQSFTDANTDTMTYDLLGRRFYVGFRTA EEEEEEEEEEEECCCCEEEECHHHHHHCCCCCHHHHCCCCCCEEEHHHHCCEEEEEEEEC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA