| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487890
Identifier: 103487890
GI number: 103487890
Start: 2544061
End: 2544765
Strand: Reverse
Name: 103487890
Synonym: Sala_2410
Alternate gene names: NA
Gene position: 2544765-2544061 (Counterclockwise)
Preceding gene: 103487891
Following gene: 103487889
Centisome position: 76.07
GC content: 66.1
Gene sequence:
>705_bases ATGGCGATCCGTTGGCCGCTGCTCGTCCGGCGAACGCATAAATGGCTGGCCTTGGTGGTCGGCGTCCAGGCGCTGCTCTG GACGCTGACCGGCTTCTACATGGTGGTCGTGCATATCGACACCATCCATGGCGACCATCTCGTGCGCGCGCCGATGGTTC AGCCCTTCGACCTCGCGGGCCTCGCGCCGCCGTCGCGGATCGTTGCGGCCGCGCCCGGTGCGTCCGAGGTTCGCTTGCAG CGGTTCTTCGATCGCCCCGTCTGGCGCGCTGAAACTCCCGAAGGGGCGCGGCTGTTCGATGCCCGCTCGGGTGCGCCGCT GCCTGCGCTTACCGAGTCCCAGGTCCGCGAGCAGGCGCGGCGCATCTACACCGGCGACGGCAAGATCGTGTCGGTGCGGC TGTTGACCGAAGCGCCACAGGAAATGCAGTCGCGCAAGCCGCCCTATTGGCAGGTCGAGTTCGAGGGCTGGAACCGCCCG ACGCTCTATCTGTCGCCGACGACCGGTGAGCTTATCTCGCGCCGCCACGCATTGTGGCGCGTGTTCGACTTCGCGTGGAT GCTCCACATCATGGACTATGATGAGCGGACCGACGTCAACAACCCGTTGCTCCGCGTCGCGACCTGGAGCGTCTTCGCGA TGGCGATCAGCGGGGCGTGGTTGCTGATCTGGTCCTTCAAACGCCGCAAGAGGAAGCAGGCATGA
Upstream 100 bases:
>100_bases TCCAGAGCTTCACCGATGCGAACACCGACACGATGACCTATGACCTGCTCGGACGGCGTTTCTACGTCGGCTTCCGCACC GCGTTCTGAGGGTAATCGAT
Downstream 100 bases:
>100_bases AACGCATCCGACTGACGCCGCTCTTCTTCCGGCGCATCCACAAATGGGTCGGGCTGATCCTGGGTCTCCAGTTCCTGCTC TGGGCGCTCAGCGGATCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix Domain-Containing Protein
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MAIRWPLLVRRTHKWLALVVGVQALLWTLTGFYMVVVHIDTIHGDHLVRAPMVQPFDLAGLAPPSRIVAAAPGASEVRLQ RFFDRPVWRAETPEGARLFDARSGAPLPALTESQVREQARRIYTGDGKIVSVRLLTEAPQEMQSRKPPYWQVEFEGWNRP TLYLSPTTGELISRRHALWRVFDFAWMLHIMDYDERTDVNNPLLRVATWSVFAMAISGAWLLIWSFKRRKRKQA
Sequences:
>Translated_234_residues MAIRWPLLVRRTHKWLALVVGVQALLWTLTGFYMVVVHIDTIHGDHLVRAPMVQPFDLAGLAPPSRIVAAAPGASEVRLQ RFFDRPVWRAETPEGARLFDARSGAPLPALTESQVREQARRIYTGDGKIVSVRLLTEAPQEMQSRKPPYWQVEFEGWNRP TLYLSPTTGELISRRHALWRVFDFAWMLHIMDYDERTDVNNPLLRVATWSVFAMAISGAWLLIWSFKRRKRKQA >Mature_233_residues AIRWPLLVRRTHKWLALVVGVQALLWTLTGFYMVVVHIDTIHGDHLVRAPMVQPFDLAGLAPPSRIVAAAPGASEVRLQR FFDRPVWRAETPEGARLFDARSGAPLPALTESQVREQARRIYTGDGKIVSVRLLTEAPQEMQSRKPPYWQVEFEGWNRPT LYLSPTTGELISRRHALWRVFDFAWMLHIMDYDERTDVNNPLLRVATWSVFAMAISGAWLLIWSFKRRKRKQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26996; Mature: 26865
Theoretical pI: Translated: 11.02; Mature: 11.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRWPLLVRRTHKWLALVVGVQALLWTLTGFYMVVVHIDTIHGDHLVRAPMVQPFDLAG CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCEEECCCCCCCCCCC LAPPSRIVAAAPGASEVRLQRFFDRPVWRAETPEGARLFDARSGAPLPALTESQVREQAR CCCCHHEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH RIYTGDGKIVSVRLLTEAPQEMQSRKPPYWQVEFEGWNRPTLYLSPTTGELISRRHALWR HEECCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHHHH VFDFAWMLHIMDYDERTDVNNPLLRVATWSVFAMAISGAWLLIWSFKRRKRKQA HHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEEHHHHHCCCC >Mature Secondary Structure AIRWPLLVRRTHKWLALVVGVQALLWTLTGFYMVVVHIDTIHGDHLVRAPMVQPFDLAG CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCEEECCCCCCCCCCC LAPPSRIVAAAPGASEVRLQRFFDRPVWRAETPEGARLFDARSGAPLPALTESQVREQAR CCCCHHEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH RIYTGDGKIVSVRLLTEAPQEMQSRKPPYWQVEFEGWNRPTLYLSPTTGELISRRHALWR HEECCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHHHH VFDFAWMLHIMDYDERTDVNNPLLRVATWSVFAMAISGAWLLIWSFKRRKRKQA HHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEEHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA