| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pepA [H]
Identifier: 103487870
GI number: 103487870
Start: 2521467
End: 2523137
Strand: Direct
Name: pepA [H]
Synonym: Sala_2389
Alternate gene names: 103487870
Gene position: 2521467-2523137 (Clockwise)
Preceding gene: 103487865
Following gene: 103487872
Centisome position: 75.38
GC content: 69.96
Gene sequence:
>1671_bases ATGGCAAGCCGATGTCGTTCGTCGAGCCCGATTTGCGGACGGGCTGGAGGCAGCTATGCAGGACGCAGGTCGTCAAACAA CGGGGATTATCGAACGATGCGCATGAAAACACTGCTTCTTTCCGCTTGCCTGTCGCTCGCCTTCACGCCCGGCGCGATGG CGCAAACCGTGATCGGGTCGGGCGTTGTCCCGGCGAACGCCGCGAACAGCGCCGAACGCGCGATCGGCTTCGCATCGCGC GCGCCGACGGGCGCCGCGCTCGTCATTGTGATGACCGACGCCGCGCTGCCGCCGCTCGATGGCGTCGCGCTCTCCGCGCC CGAGCGGCAGGCAGTCGAGGCCGCGATCGCCGCCGCGAGCTTCGACGGCAAGGCGGAATCGACGCTGTCGCTGCGCGGCA TCGGCGCGCATCCGCGCATCCTGCTCGTCGGCGCCGGGCCGGCGCCCTCGTCGCTCGCGCTCGCCGAAGCGGGCGGCAAG GCGGCGCAGGAGATGAAGGGCGAGGCGCATCCCGTGGCGATCGCCGGCGCCTTTGGCGACACCTCCGCCGCCGAGGTCGC TTATGGCTTCGCGCTCGGCCAATATCGTTTCGACCGCTACAAGACGGTCGACCGCAAGACGCCGCCCTCCGCCGCGGTCA CGCTCGTCGGCGCCAATCCCTCGACCGCCGAGACCGCCTTTGCGACGCGCTGGCAGCCGCTCGTCGACGGCGTGCGCCTG TCGCGCGATCTGGCCAACGAGCCCGCGAACGTCATCTACCCCGAAAGCTTCGTTGCGCGCGTGCGTGCGGCGTTCGCGGG CGTTCCGGGCGTCAGCATCGAGGTGCTCGACGAAGCGGCGATGCGGCGGCTCGGCATGGGCACGCTCGTCGGCGTGGGCC AGGGCAGCCCGCGCGGCTCGCGCCTGCTCGCGGTGCGCTACCGCGGCGTGGGTGCGCCCGCCGCACCGCTGGCGTTCGTC GGCAAGGGCATCACCTTCGATTCGGGCGGCATTTCGCTCAAACCCGGCACGGGCATGTGGAACATGAAGGGCGACATGTC GGGCGCCGCGTCGGTCGTCGGCGCGGCGCTGTCGCTCGCCAAGTCGCGCGTGCCGGTGCATGTCGTCGCGGTCGCGGCGC TTGCCGAGAATATGCCCGACGGCAACGCGCAGCGTCCGGGCGACGTCGTGCGCACCCTGTCGGGCAAGACGATCGAGATG CTGAACAGCGACGCCGAGGGCCGCCTCGTCCTCGCCGACGCTAATGAATATGTCGCGCGCGAATATAAGCCGCGCGCGAT CGTCAATATCGCGACGCTCACCGGGTCGATCGTCGGTGCACTCGACGACCGATATGCGGGCCTCTTTTCGCGCGATGACG AGCTTGCCGCCGCGCTGCTCGCCGCCGGAACCGCCAGCGGCGAGGAGCTGTGGCGGATGCCGCTGCACCGGGATTATGCC GACAAGCTCAAATCGGACATCGCCGACATCCGCAACATCGCGGCGGGCCAGGGGCCGGGCGCGAGCCTCGGCGCGCATTT CATCGGCTTCTTCGTCGATGAGGACATGCCATGGGCGCATCTCGACATCGCAGGCGTCAACCGCAGCGAATCGGCAAGCC CGCTCGTGCCTAGGGGGATGACGGGCTTCGGCGTGCGTCTGCTCGACCAGCTGGCGCGCGGCGGGGAGTAG
Upstream 100 bases:
>100_bases CAACAAGCAGAAGCAACAGGAATCCCGGAAAAATCCGTCGCAACATCACTGGTCCTCTTCGCTTCGGCTCCCGCGGCATC TGTGGCGGCCATGTCGTCCA
Downstream 100 bases:
>100_bases GCCGGCCTGTCAGAAAAGGTCCAGCCGCTGTTACGTCAGGGACTGGGCCTTTCGTTCGTTCGGGACGGGCATGGGAACCG CGGCGAACAGACGGTTCATG
Product: leucyl aminopeptidase
Products: NA
Alternate protein names: Leucine aminopeptidase; LAP; Leucyl aminopeptidase [H]
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MASRCRSSSPICGRAGGSYAGRRSSNNGDYRTMRMKTLLLSACLSLAFTPGAMAQTVIGSGVVPANAANSAERAIGFASR APTGAALVIVMTDAALPPLDGVALSAPERQAVEAAIAAASFDGKAESTLSLRGIGAHPRILLVGAGPAPSSLALAEAGGK AAQEMKGEAHPVAIAGAFGDTSAAEVAYGFALGQYRFDRYKTVDRKTPPSAAVTLVGANPSTAETAFATRWQPLVDGVRL SRDLANEPANVIYPESFVARVRAAFAGVPGVSIEVLDEAAMRRLGMGTLVGVGQGSPRGSRLLAVRYRGVGAPAAPLAFV GKGITFDSGGISLKPGTGMWNMKGDMSGAASVVGAALSLAKSRVPVHVVAVAALAENMPDGNAQRPGDVVRTLSGKTIEM LNSDAEGRLVLADANEYVAREYKPRAIVNIATLTGSIVGALDDRYAGLFSRDDELAAALLAAGTASGEELWRMPLHRDYA DKLKSDIADIRNIAAGQGPGASLGAHFIGFFVDEDMPWAHLDIAGVNRSESASPLVPRGMTGFGVRLLDQLARGGE
Sequences:
>Translated_556_residues MASRCRSSSPICGRAGGSYAGRRSSNNGDYRTMRMKTLLLSACLSLAFTPGAMAQTVIGSGVVPANAANSAERAIGFASR APTGAALVIVMTDAALPPLDGVALSAPERQAVEAAIAAASFDGKAESTLSLRGIGAHPRILLVGAGPAPSSLALAEAGGK AAQEMKGEAHPVAIAGAFGDTSAAEVAYGFALGQYRFDRYKTVDRKTPPSAAVTLVGANPSTAETAFATRWQPLVDGVRL SRDLANEPANVIYPESFVARVRAAFAGVPGVSIEVLDEAAMRRLGMGTLVGVGQGSPRGSRLLAVRYRGVGAPAAPLAFV GKGITFDSGGISLKPGTGMWNMKGDMSGAASVVGAALSLAKSRVPVHVVAVAALAENMPDGNAQRPGDVVRTLSGKTIEM LNSDAEGRLVLADANEYVAREYKPRAIVNIATLTGSIVGALDDRYAGLFSRDDELAAALLAAGTASGEELWRMPLHRDYA DKLKSDIADIRNIAAGQGPGASLGAHFIGFFVDEDMPWAHLDIAGVNRSESASPLVPRGMTGFGVRLLDQLARGGE >Mature_555_residues ASRCRSSSPICGRAGGSYAGRRSSNNGDYRTMRMKTLLLSACLSLAFTPGAMAQTVIGSGVVPANAANSAERAIGFASRA PTGAALVIVMTDAALPPLDGVALSAPERQAVEAAIAAASFDGKAESTLSLRGIGAHPRILLVGAGPAPSSLALAEAGGKA AQEMKGEAHPVAIAGAFGDTSAAEVAYGFALGQYRFDRYKTVDRKTPPSAAVTLVGANPSTAETAFATRWQPLVDGVRLS RDLANEPANVIYPESFVARVRAAFAGVPGVSIEVLDEAAMRRLGMGTLVGVGQGSPRGSRLLAVRYRGVGAPAAPLAFVG KGITFDSGGISLKPGTGMWNMKGDMSGAASVVGAALSLAKSRVPVHVVAVAALAENMPDGNAQRPGDVVRTLSGKTIEML NSDAEGRLVLADANEYVAREYKPRAIVNIATLTGSIVGALDDRYAGLFSRDDELAAALLAAGTASGEELWRMPLHRDYAD KLKSDIADIRNIAAGQGPGASLGAHFIGFFVDEDMPWAHLDIAGVNRSESASPLVPRGMTGFGVRLLDQLARGGE
Specific function: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides [H]
COG id: COG0260
COG function: function code E; Leucyl aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M17 family [H]
Homologues:
Organism=Homo sapiens, GI41393561, Length=489, Percent_Identity=33.7423312883436, Blast_Score=228, Evalue=9e-60, Organism=Homo sapiens, GI47155554, Length=372, Percent_Identity=32.258064516129, Blast_Score=150, Evalue=2e-36, Organism=Escherichia coli, GI1790710, Length=464, Percent_Identity=36.2068965517241, Blast_Score=229, Evalue=5e-61, Organism=Escherichia coli, GI87082123, Length=325, Percent_Identity=38.7692307692308, Blast_Score=177, Evalue=1e-45, Organism=Caenorhabditis elegans, GI17556903, Length=296, Percent_Identity=33.445945945946, Blast_Score=145, Evalue=4e-35, Organism=Caenorhabditis elegans, GI17565172, Length=223, Percent_Identity=28.2511210762332, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355725, Length=314, Percent_Identity=33.4394904458599, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24661038, Length=288, Percent_Identity=33.6805555555556, Blast_Score=170, Evalue=3e-42, Organism=Drosophila melanogaster, GI20129969, Length=318, Percent_Identity=33.3333333333333, Blast_Score=156, Evalue=4e-38, Organism=Drosophila melanogaster, GI161077148, Length=316, Percent_Identity=32.2784810126582, Blast_Score=155, Evalue=9e-38, Organism=Drosophila melanogaster, GI20130057, Length=316, Percent_Identity=32.2784810126582, Blast_Score=155, Evalue=9e-38, Organism=Drosophila melanogaster, GI21355645, Length=317, Percent_Identity=31.8611987381703, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI24662223, Length=317, Percent_Identity=31.8611987381703, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI20129963, Length=318, Percent_Identity=34.2767295597484, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI24662227, Length=316, Percent_Identity=30.379746835443, Blast_Score=150, Evalue=3e-36, Organism=Drosophila melanogaster, GI19922386, Length=341, Percent_Identity=32.258064516129, Blast_Score=150, Evalue=3e-36, Organism=Drosophila melanogaster, GI221379063, Length=319, Percent_Identity=32.6018808777429, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI221379062, Length=319, Percent_Identity=32.6018808777429, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI21357381, Length=319, Percent_Identity=32.6018808777429, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI24646701, Length=183, Percent_Identity=32.2404371584699, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI24646703, Length=183, Percent_Identity=32.2404371584699, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI21358201, Length=183, Percent_Identity=32.2404371584699, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011356 - InterPro: IPR000819 - InterPro: IPR023042 - InterPro: IPR008283 [H]
Pfam domain/function: PF00883 Peptidase_M17; PF02789 Peptidase_M17_N [H]
EC number: =3.4.11.1; =3.4.11.10 [H]
Molecular weight: Translated: 57181; Mature: 57049
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRCRSSSPICGRAGGSYAGRRSSNNGDYRTMRMKTLLLSACLSLAFTPGAMAQTVIGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCC GVVPANAANSAERAIGFASRAPTGAALVIVMTDAALPPLDGVALSAPERQAVEAAIAAAS CCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHHC FDGKAESTLSLRGIGAHPRILLVGAGPAPSSLALAEAGGKAAQEMKGEAHPVAIAGAFGD CCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEHHHCCCHHHHHHCCCCCCEEEEECCCC TSAAEVAYGFALGQYRFDRYKTVDRKTPPSAAVTLVGANPSTAETAFATRWQPLVDGVRL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHH SRDLANEPANVIYPESFVARVRAAFAGVPGVSIEVLDEAAMRRLGMGTLVGVGQGSPRGS HHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC RLLAVRYRGVGAPAAPLAFVGKGITFDSGGISLKPGTGMWNMKGDMSGAASVVGAALSLA EEEEEEEECCCCCCCCHHHHCCCCEECCCCEEECCCCCCEECCCCCCHHHHHHHHHHHHH KSRVPVHVVAVAALAENMPDGNAQRPGDVVRTLSGKTIEMLNSDAEGRLVLADANEYVAR HCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHH EYKPRAIVNIATLTGSIVGALDDRYAGLFSRDDELAAALLAAGTASGEELWRMPLHRDYA HCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHH DKLKSDIADIRNIAAGQGPGASLGAHFIGFFVDEDMPWAHLDIAGVNRSESASPLVPRGM HHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC TGFGVRLLDQLARGGE CHHHHHHHHHHHCCCC >Mature Secondary Structure ASRCRSSSPICGRAGGSYAGRRSSNNGDYRTMRMKTLLLSACLSLAFTPGAMAQTVIGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCC GVVPANAANSAERAIGFASRAPTGAALVIVMTDAALPPLDGVALSAPERQAVEAAIAAAS CCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHHC FDGKAESTLSLRGIGAHPRILLVGAGPAPSSLALAEAGGKAAQEMKGEAHPVAIAGAFGD CCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEHHHCCCHHHHHHCCCCCCEEEEECCCC TSAAEVAYGFALGQYRFDRYKTVDRKTPPSAAVTLVGANPSTAETAFATRWQPLVDGVRL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHH SRDLANEPANVIYPESFVARVRAAFAGVPGVSIEVLDEAAMRRLGMGTLVGVGQGSPRGS HHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC RLLAVRYRGVGAPAAPLAFVGKGITFDSGGISLKPGTGMWNMKGDMSGAASVVGAALSLA EEEEEEEECCCCCCCCHHHHCCCCEECCCCEEECCCCCCEECCCCCCHHHHHHHHHHHHH KSRVPVHVVAVAALAENMPDGNAQRPGDVVRTLSGKTIEMLNSDAEGRLVLADANEYVAR HCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHH EYKPRAIVNIATLTGSIVGALDDRYAGLFSRDDELAAALLAAGTASGEELWRMPLHRDYA HCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHH DKLKSDIADIRNIAAGQGPGASLGAHFIGFFVDEDMPWAHLDIAGVNRSESASPLVPRGM HHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC TGFGVRLLDQLARGGE CHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA