| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487869
Identifier: 103487869
GI number: 103487869
Start: 2519256
End: 2521412
Strand: Reverse
Name: 103487869
Synonym: Sala_2388
Alternate gene names: NA
Gene position: 2521412-2519256 (Counterclockwise)
Preceding gene: 103487871
Following gene: 103487868
Centisome position: 75.37
GC content: 67.22
Gene sequence:
>2157_bases ATGTTGCGACGGATTTTTCCGGGATTCCTGTTGCTTCTGCTTGTTGTCGCCGCGTCGCTCGCGCTGTGGGAACCGCTCAC TGCCGAGGCGCCGCAGGCGCCCGCCTTCAAGCCCGCCGATGTGCGCATCGCGCGTGACAAGTTCGGCGTGCCGCATATCT TTGGAAAGACCGACGCCGACGTCGCCTATGGCGTCGCCTATGCGCACGCCGAGGATGATTTTTCGACCTTGCAGGAAGTG CTGGCGATGACGCGCGGGCGCGCCGGGGCGATGCTCGGGCCGGAGGGCGCCAAGGTCGATTATGCCGAGGCGCTGCTCGG TGTACGCGCCACCGCGAAGCGCGACTGGCCGCGCCTGCCCGCCGACGTGCGCGCGTTGTTCACCGCCTATGCCGCCGGCC TCAACCATTATGCCGAGAAACACCCGGACGAGGTGCGGCTGTCGGCATTGTTCCCGGTGACGGGCGAAGACGTCGTTGCG GGCTTCGTCCTCCGCTCACCCTTTTTCTTCGGGCTCGATTCGGTGCTGGGATCGCTCGTCGAAGGCACGCCGATCGGTCG CGAGGGCGGCCCCGCGCTTGACGCCACCGGCAAGCTGGTGCCGCGCGCGCTGACGCCGGTCGGCCGTGACCCGGCCGACA ACGGATCGAACGCGATGGCGGTCGCACCCGCGCGCTCGACCGATGGGGCGACGCGGCTCGTCTCCAATTCGCACCAGCCG TGGACCGGCGGCGTCGCCTGGTACGAACTGGTCGTCCATTCGGAAGAAGGCTGGGATTTCGCGGGGGCGACCTTCCCCGG CTCGCCCTATCCCTTCCTTGGTCACAATAAATATCTCGGCTGGACCAATACGGTGAACCGGCCCGACCTGATCGACGTCT ACAGGCTCGTGCTCGACGCGAGCGGCGAGAAATACCGCTTCGACGGCGGCTGGCGCCCGCTCGAGGAAAAGCGCATCTGG CTCAAGGTCAAGGTCGGTCCCTTTGTCCTGCCCGTCCCGCGCACCATCTATCGGTCGGTGCATGGACCCGTCGTGAAGAA CGACAAGGGCGCCTTTGCGATCCGCTATGCGGGGCAGGATCAGGCCAAGATGGTCACCCAATATTACCGGCTGAACAAGG CCAGGGATTTTGCCCAATGGCGTGCGGCGATGGCGGGGCAGGGTGTGCCCGCGACCAATTTCGTCTATGCCGACGCCAAG GGCAATATCGGCCTTTTCTATAATGCGATGTTCCCCGACCGGCCCGCAGGGTTCGACTGGCGCGGCGTGCTGCCCGGCGA CACCTCGGCGGCGCTGTGGACCAGGACATTGCCCTTCGACCGCGTGCCTGCGCTCGTCAATCCCCGCTCGGGCTATGTGA TGAACGCGAACAACACGCCGTGGGTCGCGGCGGGGCCGGGCGACGAGCTCGATGCCGCCGCATTCTCACCGCTGCTCGGC ATCGAGGACGACATGACCAACCGCGCGGTGCGGCTGATCGAGCTGTTCGAGGCGTCGGGTCCGATCGACGGAGCGCGGCT GAAGGCGATCAAATATGACACCGCCTATGCGCGCACCGGCTATGCGAAGGCGTGGATCGACCGGCTGCTTGCGCTCGATA CCAAGGATGATCGGGCGCTCGCGCAGGCACAGGCGCTGCTCCGAAAATGGGATTGGACGCTCGACGGAAGGGGCAAGGGC GACGCGCTCGCGCTGATGGTGTTGCGCCCCGCGAACGGCCGGCATTACCAGCGCCGCGCGCCGCCCGATCCGCAGGAGGT CTTGCGCGACGTCGTTGCGCATCTGCAGGAGCATTTCGGCGGGCTCGACCCCAGGCTCGGGACGGTGCTCCGTCTGCGCC ACGGTGAGGGGCCGAACCGCATCGACCTGCCGCTCGACGGCGGCAACGACACGGTGCGCGCATCGACCCTGTGGGACGAG GAGCCCGACGGGCGGCTGAAGGTCCGCCACGGCGACAGCTTCATCATGTTCGTGACGTGGGACCGGGGCGGGCGCGTCCG CTCCGAATCGATCCAGCCCTTTGGCGCGGCGACCACGCGCCCCGACAGCCCGCATTATAACGATCAGGCGCCGCTGTTCG TGCGCCATCAGCTCAAGCCCGTGCTGTTCGACCCGGCGGCGCTGAGGGCCAGCGGCGCGCGCTTCTATCGGCCTTGA
Upstream 100 bases:
>100_bases CAGCCCGTCCGCAAATCGGGCTCGACGAACGACATCGGCTTGCCATTGGACGACATGGCCGCCACAGATGCCGCGGGAGC CGAAGCGAAGAGGACCAGTG
Downstream 100 bases:
>100_bases AAGCCGCGCCCCACTGTCCTAAACCATTGATACAGTGCCGTCCGGCACCCGGTTTCCGGCAGGCCATCGCCTGCGCCTTG ACCCAGGGGATTTTCATGGC
Product: penicillin amidase
Products: NA
Alternate protein names: Glutaryl-7-ACA acylase; 7-beta-(4-carboxybutanamido)cephalosporanic acid acylase; CAD; GL-7-ACA acylase; GCA; Glutaryl-7-ACA acylase subunit alpha; Glutaryl-7-ACA acylase subunit beta [H]
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MLRRIFPGFLLLLLVVAASLALWEPLTAEAPQAPAFKPADVRIARDKFGVPHIFGKTDADVAYGVAYAHAEDDFSTLQEV LAMTRGRAGAMLGPEGAKVDYAEALLGVRATAKRDWPRLPADVRALFTAYAAGLNHYAEKHPDEVRLSALFPVTGEDVVA GFVLRSPFFFGLDSVLGSLVEGTPIGREGGPALDATGKLVPRALTPVGRDPADNGSNAMAVAPARSTDGATRLVSNSHQP WTGGVAWYELVVHSEEGWDFAGATFPGSPYPFLGHNKYLGWTNTVNRPDLIDVYRLVLDASGEKYRFDGGWRPLEEKRIW LKVKVGPFVLPVPRTIYRSVHGPVVKNDKGAFAIRYAGQDQAKMVTQYYRLNKARDFAQWRAAMAGQGVPATNFVYADAK GNIGLFYNAMFPDRPAGFDWRGVLPGDTSAALWTRTLPFDRVPALVNPRSGYVMNANNTPWVAAGPGDELDAAAFSPLLG IEDDMTNRAVRLIELFEASGPIDGARLKAIKYDTAYARTGYAKAWIDRLLALDTKDDRALAQAQALLRKWDWTLDGRGKG DALALMVLRPANGRHYQRRAPPDPQEVLRDVVAHLQEHFGGLDPRLGTVLRLRHGEGPNRIDLPLDGGNDTVRASTLWDE EPDGRLKVRHGDSFIMFVTWDRGGRVRSESIQPFGAATTRPDSPHYNDQAPLFVRHQLKPVLFDPAALRASGARFYRP
Sequences:
>Translated_718_residues MLRRIFPGFLLLLLVVAASLALWEPLTAEAPQAPAFKPADVRIARDKFGVPHIFGKTDADVAYGVAYAHAEDDFSTLQEV LAMTRGRAGAMLGPEGAKVDYAEALLGVRATAKRDWPRLPADVRALFTAYAAGLNHYAEKHPDEVRLSALFPVTGEDVVA GFVLRSPFFFGLDSVLGSLVEGTPIGREGGPALDATGKLVPRALTPVGRDPADNGSNAMAVAPARSTDGATRLVSNSHQP WTGGVAWYELVVHSEEGWDFAGATFPGSPYPFLGHNKYLGWTNTVNRPDLIDVYRLVLDASGEKYRFDGGWRPLEEKRIW LKVKVGPFVLPVPRTIYRSVHGPVVKNDKGAFAIRYAGQDQAKMVTQYYRLNKARDFAQWRAAMAGQGVPATNFVYADAK GNIGLFYNAMFPDRPAGFDWRGVLPGDTSAALWTRTLPFDRVPALVNPRSGYVMNANNTPWVAAGPGDELDAAAFSPLLG IEDDMTNRAVRLIELFEASGPIDGARLKAIKYDTAYARTGYAKAWIDRLLALDTKDDRALAQAQALLRKWDWTLDGRGKG DALALMVLRPANGRHYQRRAPPDPQEVLRDVVAHLQEHFGGLDPRLGTVLRLRHGEGPNRIDLPLDGGNDTVRASTLWDE EPDGRLKVRHGDSFIMFVTWDRGGRVRSESIQPFGAATTRPDSPHYNDQAPLFVRHQLKPVLFDPAALRASGARFYRP >Mature_718_residues MLRRIFPGFLLLLLVVAASLALWEPLTAEAPQAPAFKPADVRIARDKFGVPHIFGKTDADVAYGVAYAHAEDDFSTLQEV LAMTRGRAGAMLGPEGAKVDYAEALLGVRATAKRDWPRLPADVRALFTAYAAGLNHYAEKHPDEVRLSALFPVTGEDVVA GFVLRSPFFFGLDSVLGSLVEGTPIGREGGPALDATGKLVPRALTPVGRDPADNGSNAMAVAPARSTDGATRLVSNSHQP WTGGVAWYELVVHSEEGWDFAGATFPGSPYPFLGHNKYLGWTNTVNRPDLIDVYRLVLDASGEKYRFDGGWRPLEEKRIW LKVKVGPFVLPVPRTIYRSVHGPVVKNDKGAFAIRYAGQDQAKMVTQYYRLNKARDFAQWRAAMAGQGVPATNFVYADAK GNIGLFYNAMFPDRPAGFDWRGVLPGDTSAALWTRTLPFDRVPALVNPRSGYVMNANNTPWVAAGPGDELDAAAFSPLLG IEDDMTNRAVRLIELFEASGPIDGARLKAIKYDTAYARTGYAKAWIDRLLALDTKDDRALAQAQALLRKWDWTLDGRGKG DALALMVLRPANGRHYQRRAPPDPQEVLRDVVAHLQEHFGGLDPRLGTVLRLRHGEGPNRIDLPLDGGNDTVRASTLWDE EPDGRLKVRHGDSFIMFVTWDRGGRVRSESIQPFGAATTRPDSPHYNDQAPLFVRHQLKPVLFDPAALRASGARFYRP
Specific function: Catalyzes the deacylation of 7 beta-(4- carboxybutanamido)cephalosporanic acid (glutaryl-7- aminocephalosporanic acid or GL-7-ACA) to 7-aminocephalosporanic acid (7-ACA). Can not efficiently use cephalosporin C (CPC), penicillin G, or ampicillin as substr
COG id: COG2366
COG function: function code R; Protein related to penicillin acylase
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S45 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014395 - InterPro: IPR002692 [H]
Pfam domain/function: PF01804 Penicil_amidase [H]
EC number: =3.5.1.93 [H]
Molecular weight: Translated: 78846; Mature: 78846
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRIFPGFLLLLLVVAASLALWEPLTAEAPQAPAFKPADVRIARDKFGVPHIFGKTDAD CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCEECCCCCCC VAYGVAYAHAEDDFSTLQEVLAMTRGRAGAMLGPEGAKVDYAEALLGVRATAKRDWPRLP HHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC ADVRALFTAYAAGLNHYAEKHPDEVRLSALFPVTGEDVVAGFVLRSPFFFGLDSVLGSLV HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHH EGTPIGREGGPALDATGKLVPRALTPVGRDPADNGSNAMAVAPARSTDGATRLVSNSHQP CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCC WTGGVAWYELVVHSEEGWDFAGATFPGSPYPFLGHNKYLGWTNTVNRPDLIDVYRLVLDA CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC SGEKYRFDGGWRPLEEKRIWLKVKVGPFVLPVPRTIYRSVHGPVVKNDKGAFAIRYAGQD CCCEEEECCCCCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCEEECCCCCEEEEECCCH QAKMVTQYYRLNKARDFAQWRAAMAGQGVPATNFVYADAKGNIGLFYNAMFPDRPAGFDW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC RGVLPGDTSAALWTRTLPFDRVPALVNPRSGYVMNANNTPWVAAGPGDELDAAAFSPLLG CCCCCCCCCHHEEEECCCCCCCCCEECCCCCEEECCCCCCEEEECCCCCCCHHHHCCCCC IEDDMTNRAVRLIELFEASGPIDGARLKAIKYDTAYARTGYAKAWIDRLLALDTKDDRAL CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHCCCCCHHHH AQAQALLRKWDWTLDGRGKGDALALMVLRPANGRHYQRRAPPDPQEVLRDVVAHLQEHFG HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC GLDPRLGTVLRLRHGEGPNRIDLPLDGGNDTVRASTLWDEEPDGRLKVRHGDSFIMFVTW CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCEEEEEEEE DRGGRVRSESIQPFGAATTRPDSPHYNDQAPLFVRHQLKPVLFDPAALRASGARFYRP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCHHHHCCCCCCCCC >Mature Secondary Structure MLRRIFPGFLLLLLVVAASLALWEPLTAEAPQAPAFKPADVRIARDKFGVPHIFGKTDAD CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCEECCCCCCC VAYGVAYAHAEDDFSTLQEVLAMTRGRAGAMLGPEGAKVDYAEALLGVRATAKRDWPRLP HHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC ADVRALFTAYAAGLNHYAEKHPDEVRLSALFPVTGEDVVAGFVLRSPFFFGLDSVLGSLV HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHH EGTPIGREGGPALDATGKLVPRALTPVGRDPADNGSNAMAVAPARSTDGATRLVSNSHQP CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCC WTGGVAWYELVVHSEEGWDFAGATFPGSPYPFLGHNKYLGWTNTVNRPDLIDVYRLVLDA CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC SGEKYRFDGGWRPLEEKRIWLKVKVGPFVLPVPRTIYRSVHGPVVKNDKGAFAIRYAGQD CCCEEEECCCCCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCEEECCCCCEEEEECCCH QAKMVTQYYRLNKARDFAQWRAAMAGQGVPATNFVYADAKGNIGLFYNAMFPDRPAGFDW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC RGVLPGDTSAALWTRTLPFDRVPALVNPRSGYVMNANNTPWVAAGPGDELDAAAFSPLLG CCCCCCCCCHHEEEECCCCCCCCCEECCCCCEEECCCCCCEEEECCCCCCCHHHHCCCCC IEDDMTNRAVRLIELFEASGPIDGARLKAIKYDTAYARTGYAKAWIDRLLALDTKDDRAL CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHCCCCCHHHH AQAQALLRKWDWTLDGRGKGDALALMVLRPANGRHYQRRAPPDPQEVLRDVVAHLQEHFG HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC GLDPRLGTVLRLRHGEGPNRIDLPLDGGNDTVRASTLWDEEPDGRLKVRHGDSFIMFVTW CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCEEEEEEEE DRGGRVRSESIQPFGAATTRPDSPHYNDQAPLFVRHQLKPVLFDPAALRASGARFYRP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11080627 [H]