Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yqcK [H]

Identifier: 103487819

GI number: 103487819

Start: 2465989

End: 2466474

Strand: Reverse

Name: yqcK [H]

Synonym: Sala_2338

Alternate gene names: 103487819

Gene position: 2466474-2465989 (Counterclockwise)

Preceding gene: 103487820

Following gene: 103487818

Centisome position: 73.73

GC content: 65.02

Gene sequence:

>486_bases
ATGAGCCGGTTCCACATGCATGTCGGCGTTGCCGACCTCGACAAGTCGATCGCCTTTTACAGCGGGCTGTTCGGCGCGGC
GCCGAGCGTGACCAAGCCCGATTATGCCAAATGGATGCTCGACGATCCGCGGATCAATTTCGCCATCTCGGTGCGCGACG
GCGCGCATCGCGGGATCGAGCATGTCGGCTTGCAAGTCGAGGATGCCGATGAGCTGAAGGCGGTCTACGGCCGTTTGAAG
GACGCCGGCGCCCCGGTGCTCGAAGAGGGCGCGACGACCTGTTGCTACGCCAAGTCCGAAAAAAGCTGGATCGCCGATCC
CGACGGGGTGGTGTGGGAAGCCTTTCTGACCAATGGCGAGGCGACGGTGTACGGCGACAGCCCCGATTTTGCGCCGCTGG
CGTCGGCCGACGCTGCCGAAGGCGCGTGTTGCGTGCCTGCGACAGTCGAGGTGCGCCCGGCGTCCGCGCCGAACGTCTGT
TGCTGA

Upstream 100 bases:

>100_bases
CCGCGCTCGTCGGCTTCCTCATGGAAAATTGCTGCGGCGGGGCGGTCTGTGCGCCCGCGGCGGGATGTGCCACCGAAACC
AACGGCGAAAGGAAAAGCGC

Downstream 100 bases:

>100_bases
CGCCGTGACCGGGGGGCTTGGCGTGCTGGTGCTCTGCACCGGCAATTCGGCGCGCAGCATCTTGGGCGAGGCGCTGGTCG
GGCGCATGGGCGAAGGGCGG

Product: glyoxalase/bleomycin resistance protein/dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLK
DAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVC
C

Sequences:

>Translated_161_residues
MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLK
DAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVC
C
>Mature_160_residues
SRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLKD
AGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC

Specific function: Unknown

COG id: COG0346

COG function: function code E; Lactoylglutathione lyase and related lyases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2641 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 17082; Mature: 16951

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIE
CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH
HVGLQVEDADELKAVYGRLKDAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGE
HHCCEEECHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
ATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC
EEEECCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC
>Mature Secondary Structure 
SRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIE
CEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH
HVGLQVEDADELKAVYGRLKDAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGE
HHCCEEECHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
ATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC
EEEECCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895 [H]