| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487787
Identifier: 103487787
GI number: 103487787
Start: 2433611
End: 2434423
Strand: Reverse
Name: 103487787
Synonym: Sala_2306
Alternate gene names: NA
Gene position: 2434423-2433611 (Counterclockwise)
Preceding gene: 103487793
Following gene: 103487786
Centisome position: 72.77
GC content: 67.53
Gene sequence:
>813_bases ATGCCCCGGAACCCGGCAGATATTTGCCCGAAAGGGATAAAGGCCAAACAGGTTCAGAGTGAGGTCGAAGGAAACGTCCG CTTGGGGTCGCAACCGGCCGCGCATACGCGAATCTTTCCCACCCGCCCGCTCCGACGCTACAGGAAACCGATGGCCCATA TCCTGATTCTCGCCGCACTTCCCGAAGAGGCCAACGCATTGTTTCCGGACGTCGGCGAACGCAGCGACGATCCCTTCGCC GTCCGTCGCATCGCCGCGGATGGCCATGAGGTCGCCATCGCCACCTGCGGGCTCGGCAAGGTCAACGCCGCGCTGGTGGT AGGCGTGCTCGGCGGCGACGCTGACCTCATTATGATGACGGGCACTTGCGGATCGCTCGGCGCGCCGCCGGGCGCCTATT GGATCGCCGAGGCGTTGCAGCATGATTATGGCGCGACCGAGCCCGGCCGCTTCCGTCGCTATCGTGCGGGCGACTGGCCG ATAGGCGAGCCGGGGCGGGGATCGTCGGGCGCGCATTTCGCGGCGATGGCGGATCCGGGGCTCGACCTGCCGCACGCGCG CATCGCCAGCGGCGACAGTTTCATCGCCTGTCCCGATGCCGCCGCCGATCTCACGTCGCTCGGCGCAACGCTCGTCGACA TGGAGGTCGGCGCGGTGGCGCAGGCGGCGATGCGGCTCGGCAAGCCATGGGCGGCGATCAAGGCGGTGACCGACGAGGCG AATTGTGACAGCGGGGGCGCATTCCAGACGAACCTGCGCCATGCTGCCCGCGCCGCGGGGCAGGAAGTCGAGCGGTTGAT CGCGATGCTTTGA
Upstream 100 bases:
>100_bases CCTGAAACCAGTTGGCGCTTATCCCTTTGGGACAGGGGAGGGCCGGACCCCGGCCAAGGCCGGGGTTCATGGGCGTCCAA AAGTCAGGTGCTGCTCTACG
Downstream 100 bases:
>100_bases TCCGTTTCGCATCGGTCGCTTCTGTGGTAGACTGAGCCGTCTCCGCACCGAGGAGCGACACGCCATGCGCTACTACCGGT CATCCTTGCTTCTGCTCGCC
Product: purine phosphorylases family protein 1
Products: 5-methylthio-D-ribose; adenine
Alternate protein names: Purine Phosphorylases Family
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MPRNPADICPKGIKAKQVQSEVEGNVRLGSQPAAHTRIFPTRPLRRYRKPMAHILILAALPEEANALFPDVGERSDDPFA VRRIAADGHEVAIATCGLGKVNAALVVGVLGGDADLIMMTGTCGSLGAPPGAYWIAEALQHDYGATEPGRFRRYRAGDWP IGEPGRGSSGAHFAAMADPGLDLPHARIASGDSFIACPDAAADLTSLGATLVDMEVGAVAQAAMRLGKPWAAIKAVTDEA NCDSGGAFQTNLRHAARAAGQEVERLIAML
Sequences:
>Translated_270_residues MPRNPADICPKGIKAKQVQSEVEGNVRLGSQPAAHTRIFPTRPLRRYRKPMAHILILAALPEEANALFPDVGERSDDPFA VRRIAADGHEVAIATCGLGKVNAALVVGVLGGDADLIMMTGTCGSLGAPPGAYWIAEALQHDYGATEPGRFRRYRAGDWP IGEPGRGSSGAHFAAMADPGLDLPHARIASGDSFIACPDAAADLTSLGATLVDMEVGAVAQAAMRLGKPWAAIKAVTDEA NCDSGGAFQTNLRHAARAAGQEVERLIAML >Mature_269_residues PRNPADICPKGIKAKQVQSEVEGNVRLGSQPAAHTRIFPTRPLRRYRKPMAHILILAALPEEANALFPDVGERSDDPFAV RRIAADGHEVAIATCGLGKVNAALVVGVLGGDADLIMMTGTCGSLGAPPGAYWIAEALQHDYGATEPGRFRRYRAGDWPI GEPGRGSSGAHFAAMADPGLDLPHARIASGDSFIACPDAAADLTSLGATLVDMEVGAVAQAAMRLGKPWAAIKAVTDEAN CDSGGAFQTNLRHAARAAGQEVERLIAML
Specific function: Unknown
COG id: COG0775
COG function: function code F; Nucleoside phosphorylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.2.2.16; 3.2.2.9
Molecular weight: Translated: 28264; Mature: 28132
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRNPADICPKGIKAKQVQSEVEGNVRLGSQPAAHTRIFPTRPLRRYRKPMAHILILAAL CCCCCHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHEEHEEEC PEEANALFPDVGERSDDPFAVRRIAADGHEVAIATCGLGKVNAALVVGVLGGDADLIMMT CCHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEE GTCGSLGAPPGAYWIAEALQHDYGATEPGRFRRYRAGDWPIGEPGRGSSGAHFAAMADPG CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC LDLPHARIASGDSFIACPDAAADLTSLGATLVDMEVGAVAQAAMRLGKPWAAIKAVTDEA CCCCCHHHCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHEEECCCC NCDSGGAFQTNLRHAARAAGQEVERLIAML CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PRNPADICPKGIKAKQVQSEVEGNVRLGSQPAAHTRIFPTRPLRRYRKPMAHILILAAL CCCCHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHEEHEEEC PEEANALFPDVGERSDDPFAVRRIAADGHEVAIATCGLGKVNAALVVGVLGGDADLIMMT CCHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEE GTCGSLGAPPGAYWIAEALQHDYGATEPGRFRRYRAGDWPIGEPGRGSSGAHFAAMADPG CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC LDLPHARIASGDSFIACPDAAADLTSLGATLVDMEVGAVAQAAMRLGKPWAAIKAVTDEA CCCCCHHHCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHEEECCCC NCDSGGAFQTNLRHAARAAGQEVERLIAML CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: methylthioadenosine; H2O
Specific reaction: methylthioadenosine + H2O = 5-methylthio-D-ribose + adenine
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA