| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487780
Identifier: 103487780
GI number: 103487780
Start: 2426043
End: 2427269
Strand: Direct
Name: 103487780
Synonym: Sala_2299
Alternate gene names: NA
Gene position: 2426043-2427269 (Clockwise)
Preceding gene: 103487778
Following gene: 103487781
Centisome position: 72.52
GC content: 71.8
Gene sequence:
>1227_bases TTGCGCGACGTTCCCCCGCCGACGCGCCGGTCAGGTCGGCGCCGCCTTCGCCTTGCGCGCCTGCCGCCACGAGCGCCGCT TCTTCACCATCGCCACCCCGTCGTCCGCGCCCCCCGGCGACGCCGTCAGCGGCACCGCCGGCACCGGCCGCCCCTCGGCC TCCGCGGCCGCGATCCATTCGCGATACACTTCGGGAATATCGCCCCCCGCCGCCACCCAGCCCGCCTCGCCGCCAAAGCG TTGCACCGGATCGGCGTCGGGCCGATCCTCGCCGATCTGCAACGGCCCGTGATAGGGCGAGGCAAGCGCGTCCAGCCGCA CCAGCGGCACCGCGGGGTCGCCCAGCTGCGCCGCGATCGCGTCGGGGCCGCCCGCCGCGATCGCGGCATCGCTCGCACGC TGCCGCGCGGCGAGCGCGAGCAGCGCCGCATCGATCTCCGCCCGCGCCTGTTCGTCGAGTTCCATCCCCTCGAACCCCTC GATCAGCCCCGCCGCCGCATCCTGTGCCACGAGCGCGTCGCCATGCGTCCCGAGCGCCGTCGAGACGCCGCCATGGATCA CCGTCCGCACCGTCGTGGTCGACGCCTCGGCCATCGCGCCCGCCGCCCCCGCGCCTCCCGCAGGTCCGCTCCCGTCGATC CCCCCTTTCCCGCGCGCGTCGCTCTCCCTGTTCCCGTTCGTGTCGAGCGAAGTCGAGGCACCCCGCGCTTCGACGCGACC CGCCGAGGCCGCCGCCCCCGCGCTCGCCCGCGTCGAGAAATAATTGATCGTCGTGCGCTTGCCCCCCGCATCCTGGCCGT AATGGCGCAGGCAGAACATCAGCAGCGCGTCATTATGCTTGCGCCGGAATCCCATCAGCTTGCCCGCGACAAAGACGGGC ACCAGATAGCCGTCGATCGCGCGCTCGAACGCAATATCCTTCAGCCGCGCGACCCCGAAATCGAGCGCCGCCTCCCACGC CCGCCGAAAGCTCTCCGCGCCCGGCGCGCGGCGCAGCGTATAGCAATTCGTCTGCGCCATATTGACCATCGCCGCCGCGC GGCTGACCGACCCCGTATCGGCGAGCGCGGCGATAAAGGCCTTCTGCCGCTCGGGCGTCCACCCGTCGTGCCGATATTTG CGCGGCACCGGCGTAAAGTCGGGAAGCGGCGGCCGCGCCGCCTTCGCGATCGGGGTGCGATTCTGCATATCCTGTTCTCC TGTCGGTCAAAACCGGACAGGATATGA
Upstream 100 bases:
>100_bases GCGGCGTATCGGTCATGGGCAACTTTCCAGGAAAATGATGCGCGGCCCTAGCGGCACCTGACCGCCATCGTCAATCGCGA AGGCGCGCGGACCGCACGGA
Downstream 100 bases:
>100_bases CGGAGGGGAGGAATGTAGGAAAGGGTTTTGTTTATGGTTTGTTCTGGAATGAGGGTGGATGGCGTTACGCCCCATCAAAG CCGTAGCTGGCCGCAAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MRDVPPPTRRSGRRRLRLARLPPRAPLLHHRHPVVRAPRRRRQRHRRHRPPLGLRGRDPFAIHFGNIAPRRHPARLAAKA LHRIGVGPILADLQRPVIGRGKRVQPHQRHRGVAQLRRDRVGAARRDRGIARTLPRGEREQRRIDLRPRLFVEFHPLEPL DQPRRRILCHERVAMRPERRRDAAMDHRPHRRGRRLGHRARRPRASRRSAPVDPPFPARVALPVPVRVERSRGTPRFDAT RRGRRPRARPRREIIDRRALAPRILAVMAQAEHQQRVIMLAPESHQLARDKDGHQIAVDRALERNILQPRDPEIERRLPR PPKALRARRAAQRIAIRLRHIDHRRRAADRPRIGERGDKGLLPLGRPPVVPIFARHRRKVGKRRPRRLRDRGAILHILFS CRSKPDRI
Sequences:
>Translated_408_residues MRDVPPPTRRSGRRRLRLARLPPRAPLLHHRHPVVRAPRRRRQRHRRHRPPLGLRGRDPFAIHFGNIAPRRHPARLAAKA LHRIGVGPILADLQRPVIGRGKRVQPHQRHRGVAQLRRDRVGAARRDRGIARTLPRGEREQRRIDLRPRLFVEFHPLEPL DQPRRRILCHERVAMRPERRRDAAMDHRPHRRGRRLGHRARRPRASRRSAPVDPPFPARVALPVPVRVERSRGTPRFDAT RRGRRPRARPRREIIDRRALAPRILAVMAQAEHQQRVIMLAPESHQLARDKDGHQIAVDRALERNILQPRDPEIERRLPR PPKALRARRAAQRIAIRLRHIDHRRRAADRPRIGERGDKGLLPLGRPPVVPIFARHRRKVGKRRPRRLRDRGAILHILFS CRSKPDRI >Mature_408_residues MRDVPPPTRRSGRRRLRLARLPPRAPLLHHRHPVVRAPRRRRQRHRRHRPPLGLRGRDPFAIHFGNIAPRRHPARLAAKA LHRIGVGPILADLQRPVIGRGKRVQPHQRHRGVAQLRRDRVGAARRDRGIARTLPRGEREQRRIDLRPRLFVEFHPLEPL DQPRRRILCHERVAMRPERRRDAAMDHRPHRRGRRLGHRARRPRASRRSAPVDPPFPARVALPVPVRVERSRGTPRFDAT RRGRRPRARPRREIIDRRALAPRILAVMAQAEHQQRVIMLAPESHQLARDKDGHQIAVDRALERNILQPRDPEIERRLPR PPKALRARRAAQRIAIRLRHIDHRRRAADRPRIGERGDKGLLPLGRPPVVPIFARHRRKVGKRRPRRLRDRGAILHILFS CRSKPDRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48049; Mature: 48049
Theoretical pI: Translated: 12.78; Mature: 12.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDVPPPTRRSGRRRLRLARLPPRAPLLHHRHPVVRAPRRRRQRHRRHRPPLGLRGRDPF CCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCE AIHFGNIAPRRHPARLAAKALHRIGVGPILADLQRPVIGRGKRVQPHQRHRGVAQLRRDR EEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VGAARRDRGIARTLPRGEREQRRIDLRPRLFVEFHPLEPLDQPRRRILCHERVAMRPERR HCHHHHHCCHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHH RDAAMDHRPHRRGRRLGHRARRPRASRRSAPVDPPFPARVALPVPVRVERSRGTPRFDAT HHHHHCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCHH RRGRRPRARPRREIIDRRALAPRILAVMAQAEHQQRVIMLAPESHQLARDKDGHQIAVDR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHCCCCCCEEHHHH ALERNILQPRDPEIERRLPRPPKALRARRAAQRIAIRLRHIDHRRRAADRPRIGERGDKG HHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LLPLGRPPVVPIFARHRRKVGKRRPRRLRDRGAILHILFSCRSKPDRI CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRDVPPPTRRSGRRRLRLARLPPRAPLLHHRHPVVRAPRRRRQRHRRHRPPLGLRGRDPF CCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCE AIHFGNIAPRRHPARLAAKALHRIGVGPILADLQRPVIGRGKRVQPHQRHRGVAQLRRDR EEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VGAARRDRGIARTLPRGEREQRRIDLRPRLFVEFHPLEPLDQPRRRILCHERVAMRPERR HCHHHHHCCHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHH RDAAMDHRPHRRGRRLGHRARRPRASRRSAPVDPPFPARVALPVPVRVERSRGTPRFDAT HHHHHCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCHH RRGRRPRARPRREIIDRRALAPRILAVMAQAEHQQRVIMLAPESHQLARDKDGHQIAVDR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHCCCCCCEEHHHH ALERNILQPRDPEIERRLPRPPKALRARRAAQRIAIRLRHIDHRRRAADRPRIGERGDKG HHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LLPLGRPPVVPIFARHRRKVGKRRPRRLRDRGAILHILFSCRSKPDRI CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA