Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487778

Identifier: 103487778

GI number: 103487778

Start: 2424998

End: 2425582

Strand: Direct

Name: 103487778

Synonym: Sala_2297

Alternate gene names: NA

Gene position: 2424998-2425582 (Clockwise)

Preceding gene: 103487777

Following gene: 103487780

Centisome position: 72.49

GC content: 69.4

Gene sequence:

>585_bases
ATGGTCCAACGCCGCTTTCTGAACGCCGCCGTCGCGTCGGCGATGACGCTCGCCGGGCTGCTCGCCGGCGCTCCCGCCGC
GGCGCAATCCTATCTGCAATGCGTTCCCTTCGCGCGCGCCGAATCGGGCGTCGACATCCGCGGCAACGCCAGGACCTGGT
GGGCGCAGGCGGCGGGAAGCTATGCGCGCGGCAATGAACCGCGGCCGGGTGCGGTCATGGCCTTTGCGGGCACGCGCGGG
ATGCCGATGGGTCATGTCGCGGTGGTCAAGAAGATCGTCGGCGACCGCGAAATCCTGATCGACCATGCCAACTGGTCGCC
GATCAATGGCCGCCGCGGCCAGATCGAGCGCGATGTTCGCGTCGTCGACGTCAGCGACGCAGGCGACTGGAGCCTGGTGC
GCGTCTGGTACGCCCCGATCGGCGACCTTGGCCTGCGCGCCAATCCGGTGCAGGGCTTCATCTATGCGGGCGGCGAAGCG
GGCGGGACGACCCCGGCGCCCAGCTTCAAGGCGCCCGTCTGGGCAACGAATGACTGGAAACCCGGCAACGGCCTTGCGCT
CGTTGCCGCCTCGCTCGGCAACTGA

Upstream 100 bases:

>100_bases
CGCATCTGCGGCGCGGCTCGTCGCTCGACGGGTGGTGGACGCCGCCGGGCGTGGCAAAGACGCCCCAACGCTTGAGAACA
AGCCCCGGGGGTCGCAATCC

Downstream 100 bases:

>100_bases
GCCTTCCCCCCCACCTCCAGGGGCTCGACGAGCGACGAAACCATCCGGGGCGGCCCGCCGCTCCGGGTGGTTTCTGCTTT
TAGAGCGCGGGGAGTTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: CHAP Domain Containing Protein; Surface Antigen; Chap Domain Containing Protein; CHAP Domain Family

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG
MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA
GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN

Sequences:

>Translated_194_residues
MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG
MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA
GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN
>Mature_194_residues
MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG
MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA
GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN

Specific function: Unknown

COG id: COG3942

COG function: function code R; Surface antigen

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20394; Mature: 20394

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGS
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEHHHCCC
YARGNEPRPGAVMAFAGTRGMPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVR
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECCEE
VVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEAGGTTPAPSFKAPVWATNDWK
EEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC
PGNGLALVAASLGN
CCCCEEEEEEECCC
>Mature Secondary Structure
MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGS
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEHHHCCC
YARGNEPRPGAVMAFAGTRGMPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVR
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECCEE
VVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEAGGTTPAPSFKAPVWATNDWK
EEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC
PGNGLALVAASLGN
CCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA