| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487778
Identifier: 103487778
GI number: 103487778
Start: 2424998
End: 2425582
Strand: Direct
Name: 103487778
Synonym: Sala_2297
Alternate gene names: NA
Gene position: 2424998-2425582 (Clockwise)
Preceding gene: 103487777
Following gene: 103487780
Centisome position: 72.49
GC content: 69.4
Gene sequence:
>585_bases ATGGTCCAACGCCGCTTTCTGAACGCCGCCGTCGCGTCGGCGATGACGCTCGCCGGGCTGCTCGCCGGCGCTCCCGCCGC GGCGCAATCCTATCTGCAATGCGTTCCCTTCGCGCGCGCCGAATCGGGCGTCGACATCCGCGGCAACGCCAGGACCTGGT GGGCGCAGGCGGCGGGAAGCTATGCGCGCGGCAATGAACCGCGGCCGGGTGCGGTCATGGCCTTTGCGGGCACGCGCGGG ATGCCGATGGGTCATGTCGCGGTGGTCAAGAAGATCGTCGGCGACCGCGAAATCCTGATCGACCATGCCAACTGGTCGCC GATCAATGGCCGCCGCGGCCAGATCGAGCGCGATGTTCGCGTCGTCGACGTCAGCGACGCAGGCGACTGGAGCCTGGTGC GCGTCTGGTACGCCCCGATCGGCGACCTTGGCCTGCGCGCCAATCCGGTGCAGGGCTTCATCTATGCGGGCGGCGAAGCG GGCGGGACGACCCCGGCGCCCAGCTTCAAGGCGCCCGTCTGGGCAACGAATGACTGGAAACCCGGCAACGGCCTTGCGCT CGTTGCCGCCTCGCTCGGCAACTGA
Upstream 100 bases:
>100_bases CGCATCTGCGGCGCGGCTCGTCGCTCGACGGGTGGTGGACGCCGCCGGGCGTGGCAAAGACGCCCCAACGCTTGAGAACA AGCCCCGGGGGTCGCAATCC
Downstream 100 bases:
>100_bases GCCTTCCCCCCCACCTCCAGGGGCTCGACGAGCGACGAAACCATCCGGGGCGGCCCGCCGCTCCGGGTGGTTTCTGCTTT TAGAGCGCGGGGAGTTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: CHAP Domain Containing Protein; Surface Antigen; Chap Domain Containing Protein; CHAP Domain Family
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN
Sequences:
>Translated_194_residues MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN >Mature_194_residues MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGSYARGNEPRPGAVMAFAGTRG MPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVRVVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEA GGTTPAPSFKAPVWATNDWKPGNGLALVAASLGN
Specific function: Unknown
COG id: COG3942
COG function: function code R; Surface antigen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20394; Mature: 20394
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: PS50911 CHAP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGS CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEHHHCCC YARGNEPRPGAVMAFAGTRGMPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVR CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECCEE VVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEAGGTTPAPSFKAPVWATNDWK EEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC PGNGLALVAASLGN CCCCEEEEEEECCC >Mature Secondary Structure MVQRRFLNAAVASAMTLAGLLAGAPAAAQSYLQCVPFARAESGVDIRGNARTWWAQAAGS CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEHHHCCC YARGNEPRPGAVMAFAGTRGMPMGHVAVVKKIVGDREILIDHANWSPINGRRGQIERDVR CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECCEE VVDVSDAGDWSLVRVWYAPIGDLGLRANPVQGFIYAGGEAGGTTPAPSFKAPVWATNDWK EEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC PGNGLALVAASLGN CCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA