| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487740
Identifier: 103487740
GI number: 103487740
Start: 2376832
End: 2378184
Strand: Reverse
Name: 103487740
Synonym: Sala_2259
Alternate gene names: NA
Gene position: 2378184-2376832 (Counterclockwise)
Preceding gene: 103487741
Following gene: 103487739
Centisome position: 71.09
GC content: 68.37
Gene sequence:
>1353_bases ATGGACAGCATGCGCGGGCTGCTTGCGGGCAGCCACGGTCAGGACGACGAGGCGATCGACGCGCCTGCGGCTGTCGGCGT CGACGAACGGCGGATGCAGGTGCGGGCCTATAATTACTGGGCCTCGCTGCTCGCCGACCGCGCCTATCCCTCGGTCGAGG ATCTCGACCTCGACCGCGCGGATTTCGGTCCGCACGCGGTCCTGCTCGATTTCACGCAGGGCATCGACAACCCCGGCATC GCCTTCCTTGGCGAGCGGCTCCGCGACGAGTCGCAGATCGACGAGAATGTCCATTATATCAGCCAGATACCGGGCCGCTC GCTGCTGTCGCGGCTGACCGACCATTATCTGCAGATCATCGCCAATCGCGCGCCGATCGGCTTCGAGGCCGAGTTCGAGA GCGATCGCGGGGTGACGATCATGTATCGCGGCATATTGCTGCCCCTGTCGTCCGACGACGACACGATCGATTTCATCATG GGCGTGATCAACTGGAAGGAAGCGGTTCCCGCCGAGCAGGAAGAGGAATTGCAGCTCTCGGTCGAACAGGCGCTGCGCAG CGCCGCGCCGCTGACCGCGCCCGTTCCGGTGTGGGCCGATGGCCCCGATTCGCTGCATCTCGATGCGGATTTGGGCGCCG ATGTCGCGCCGGGTTTTGCTGCGCTGGACGCAAGCGCCGAGCTGTTCGGCGATGCCGAAGGCACAGGCGACGCCGATGAC GAGGGGGGTGTCGCCGCCGATCCGGGGGCCGATGCCGAGCTGGCCGACTGGCTGGCGCTGGCGCGCGCAACCGCCGAACG CGCGATCGCCGCCGACTGCCGCAGCCGCAGCGCGCTCTATCAGGCGGTCGGCAAGGCGTGGGATTTCGCGCTCGCCGCCG AGGAGCAGCCCGAAGCCTTTGCCGCGCTGCTCGACGATGCGGGACTGACCGCGCAGGCGCGCGCACCGATGACCCCGGTG GTCAAGCTGGTCTTCGGCGCCGCCTATGACAAGACGCGGCTGGCCGAATATGCCTGCGCGCTGGCCCACGCGAAGGAAGA GGGTATCGCGCGCGGCGCGCTAGCCACCTATCTCGATCGTTATCCGGGCGGGCTCAAGGGGCTGGTCAAGGATGCCCGCG CGCGGCGCAAACCGACGGCGGCAGCTGACCCGTCCGACACGCGGCTCGACGCGCTGCGCCGCGCGCAGCCCGCGGTGATA CTGGAGCATGACGCGGGCGACGCCGAATTCGTCGTGCTGATCGCACGCGCGATGCCGGGCGGGCATGTCGGGATCGTCGC CAAGGCGGCCGACGATCCGGCGCTGGTCGCGAAGCTCGCGAAAAAGGCGGTTGCGATCACGTCTGGCGGTTGA
Upstream 100 bases:
>100_bases ACGAAGCTATGCTTCGGCGCACCCATCACACCATCGTTTACGCGGCTTTTACCAGTCCCGGCGCATAGGATTGACCGATA TTCGTGGCTGGGGATAAATG
Downstream 100 bases:
>100_bases CGCAGCCCGTGTAACAGACGACCCCAAAGTTGAAATAATTTTACGCGAACGCGCGAACGAGGCCTTGAGCCGCGCGCGCC GGAGGCGCATAGGGGGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG
Sequences:
>Translated_450_residues MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG >Mature_450_residues MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47690; Mature: 47690
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRA CCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC DFGPHAVLLDFTQGIDNPGIAFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQII CCCCCEEEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIMGVINWKEAVPAEQEEELQLS HCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH VEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD HHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCC EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAF CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH AALLDDAGLTAQARAPMTPVVKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDR HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVILEHDAGDAEFVVLIARAMPG CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHCCC GHVGIVAKAADDPALVAKLAKKAVAITSGG CCEEEEEECCCCHHHHHHHHHHHEEEECCC >Mature Secondary Structure MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRA CCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC DFGPHAVLLDFTQGIDNPGIAFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQII CCCCCEEEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIMGVINWKEAVPAEQEEELQLS HCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH VEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD HHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCC EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAF CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH AALLDDAGLTAQARAPMTPVVKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDR HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVILEHDAGDAEFVVLIARAMPG CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHCCC GHVGIVAKAADDPALVAKLAKKAVAITSGG CCEEEEEECCCCHHHHHHHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA