Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487740

Identifier: 103487740

GI number: 103487740

Start: 2376832

End: 2378184

Strand: Reverse

Name: 103487740

Synonym: Sala_2259

Alternate gene names: NA

Gene position: 2378184-2376832 (Counterclockwise)

Preceding gene: 103487741

Following gene: 103487739

Centisome position: 71.09

GC content: 68.37

Gene sequence:

>1353_bases
ATGGACAGCATGCGCGGGCTGCTTGCGGGCAGCCACGGTCAGGACGACGAGGCGATCGACGCGCCTGCGGCTGTCGGCGT
CGACGAACGGCGGATGCAGGTGCGGGCCTATAATTACTGGGCCTCGCTGCTCGCCGACCGCGCCTATCCCTCGGTCGAGG
ATCTCGACCTCGACCGCGCGGATTTCGGTCCGCACGCGGTCCTGCTCGATTTCACGCAGGGCATCGACAACCCCGGCATC
GCCTTCCTTGGCGAGCGGCTCCGCGACGAGTCGCAGATCGACGAGAATGTCCATTATATCAGCCAGATACCGGGCCGCTC
GCTGCTGTCGCGGCTGACCGACCATTATCTGCAGATCATCGCCAATCGCGCGCCGATCGGCTTCGAGGCCGAGTTCGAGA
GCGATCGCGGGGTGACGATCATGTATCGCGGCATATTGCTGCCCCTGTCGTCCGACGACGACACGATCGATTTCATCATG
GGCGTGATCAACTGGAAGGAAGCGGTTCCCGCCGAGCAGGAAGAGGAATTGCAGCTCTCGGTCGAACAGGCGCTGCGCAG
CGCCGCGCCGCTGACCGCGCCCGTTCCGGTGTGGGCCGATGGCCCCGATTCGCTGCATCTCGATGCGGATTTGGGCGCCG
ATGTCGCGCCGGGTTTTGCTGCGCTGGACGCAAGCGCCGAGCTGTTCGGCGATGCCGAAGGCACAGGCGACGCCGATGAC
GAGGGGGGTGTCGCCGCCGATCCGGGGGCCGATGCCGAGCTGGCCGACTGGCTGGCGCTGGCGCGCGCAACCGCCGAACG
CGCGATCGCCGCCGACTGCCGCAGCCGCAGCGCGCTCTATCAGGCGGTCGGCAAGGCGTGGGATTTCGCGCTCGCCGCCG
AGGAGCAGCCCGAAGCCTTTGCCGCGCTGCTCGACGATGCGGGACTGACCGCGCAGGCGCGCGCACCGATGACCCCGGTG
GTCAAGCTGGTCTTCGGCGCCGCCTATGACAAGACGCGGCTGGCCGAATATGCCTGCGCGCTGGCCCACGCGAAGGAAGA
GGGTATCGCGCGCGGCGCGCTAGCCACCTATCTCGATCGTTATCCGGGCGGGCTCAAGGGGCTGGTCAAGGATGCCCGCG
CGCGGCGCAAACCGACGGCGGCAGCTGACCCGTCCGACACGCGGCTCGACGCGCTGCGCCGCGCGCAGCCCGCGGTGATA
CTGGAGCATGACGCGGGCGACGCCGAATTCGTCGTGCTGATCGCACGCGCGATGCCGGGCGGGCATGTCGGGATCGTCGC
CAAGGCGGCCGACGATCCGGCGCTGGTCGCGAAGCTCGCGAAAAAGGCGGTTGCGATCACGTCTGGCGGTTGA

Upstream 100 bases:

>100_bases
ACGAAGCTATGCTTCGGCGCACCCATCACACCATCGTTTACGCGGCTTTTACCAGTCCCGGCGCATAGGATTGACCGATA
TTCGTGGCTGGGGATAAATG

Downstream 100 bases:

>100_bases
CGCAGCCCGTGTAACAGACGACCCCAAAGTTGAAATAATTTTACGCGAACGCGCGAACGAGGCCTTGAGCCGCGCGCGCC
GGAGGCGCATAGGGGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI
AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM
GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD
EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV
VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI
LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG

Sequences:

>Translated_450_residues
MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI
AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM
GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD
EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV
VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI
LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG
>Mature_450_residues
MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRADFGPHAVLLDFTQGIDNPGI
AFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQIIANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIM
GVINWKEAVPAEQEEELQLSVEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD
EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAFAALLDDAGLTAQARAPMTPV
VKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDRYPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVI
LEHDAGDAEFVVLIARAMPGGHVGIVAKAADDPALVAKLAKKAVAITSGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47690; Mature: 47690

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRA
CCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
DFGPHAVLLDFTQGIDNPGIAFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQII
CCCCCEEEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIMGVINWKEAVPAEQEEELQLS
HCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
VEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD
HHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCC
EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
AALLDDAGLTAQARAPMTPVVKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDR
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVILEHDAGDAEFVVLIARAMPG
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHCCC
GHVGIVAKAADDPALVAKLAKKAVAITSGG
CCEEEEEECCCCHHHHHHHHHHHEEEECCC
>Mature Secondary Structure
MDSMRGLLAGSHGQDDEAIDAPAAVGVDERRMQVRAYNYWASLLADRAYPSVEDLDLDRA
CCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
DFGPHAVLLDFTQGIDNPGIAFLGERLRDESQIDENVHYISQIPGRSLLSRLTDHYLQII
CCCCCEEEEEHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ANRAPIGFEAEFESDRGVTIMYRGILLPLSSDDDTIDFIMGVINWKEAVPAEQEEELQLS
HCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
VEQALRSAAPLTAPVPVWADGPDSLHLDADLGADVAPGFAALDASAELFGDAEGTGDADD
HHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCC
EGGVAADPGADAELADWLALARATAERAIAADCRSRSALYQAVGKAWDFALAAEEQPEAF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
AALLDDAGLTAQARAPMTPVVKLVFGAAYDKTRLAEYACALAHAKEEGIARGALATYLDR
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPGGLKGLVKDARARRKPTAAADPSDTRLDALRRAQPAVILEHDAGDAEFVVLIARAMPG
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHCCC
GHVGIVAKAADDPALVAKLAKKAVAITSGG
CCEEEEEECCCCHHHHHHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA