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The map label for this gene is ycfQ [H]

Identifier: 103487741

GI number: 103487741

Start: 2378504

End: 2379148

Strand: Reverse

Name: ycfQ [H]

Synonym: Sala_2260

Alternate gene names: 103487741

Gene position: 2379148-2378504 (Counterclockwise)

Preceding gene: 103487745

Following gene: 103487740

Centisome position: 71.12

GC content: 67.29

Gene sequence:

>645_bases
ATGGAAGTTGACACCGCCACCAACGCCGGGTCGCAATCCGCGGCGCAGGGCGGATCGCACAAGGGGCGTCCGCGCGAATT
CTGCGTCGATGCGGCGCTCGCCGCGGCGCTGCGCGTCTTCTGGTCGAAGGGCTATGAAGGCGCGTCGATGGCCGACCTCA
CCGAAGCGATGGGGATCACCAAGCCCAGCCTCTATGCCGCCTTCGGCAACAAGGAGGCTCTCTTCAACAAGGCGCTCGAC
CTTTATGAGCGTGAAAAGCTCGACTATATACAGGCCGCGCTCGCCGCGCCGACCGCGCGCGGCGTGGCCGAACGGCTGAT
GCGCGGCGCGCTCGACATGTACACCTGTCCCGAAAATCCGAACGGCTGCCTGGGCGTGATCGCCTCGGTCGCGTGCGGGG
CGGAGGCCGAGTGCATCCGCCAGGCGGTGCTCGAACGCAGCGCCGCGGCAAAACGCGCGATACTCGACCGGCTGACGCGC
GCCAAGGATGAGGGCGATTTTCCCGAAGACACCGACCCCGAAGGACTCGCCGCCTTCCTGATGGCGGTAAACCAGGGCAT
GTCGGTGCAGGCGGGTGCGGGCGCGACGCGCGCCGAACTCGAACGGCTGGTCGAAACGAGCCTGAAATTGTGGCCGGGGC
GCTGA

Upstream 100 bases:

>100_bases
GGTCGGCGGCCATGCGCTGAACGGCGACGTGGGGACGGGGCTCGGCCGAACCCGCGCGGCGCTGGACTTTTTGCGACGGC
TAAATTATATACCAGTCGTT

Downstream 100 bases:

>100_bases
ACGGGGCATTTTATCGTCGGATCCGGCACCCGTGGTTCGGGTAACGGTCCTAAAAAGATTATTTTTACTGGTCGGTACAA
AATGCGCTTGACGCCGCGCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MEVDTATNAGSQSAAQGGSHKGRPREFCVDAALAAALRVFWSKGYEGASMADLTEAMGITKPSLYAAFGNKEALFNKALD
LYEREKLDYIQAALAAPTARGVAERLMRGALDMYTCPENPNGCLGVIASVACGAEAECIRQAVLERSAAAKRAILDRLTR
AKDEGDFPEDTDPEGLAAFLMAVNQGMSVQAGAGATRAELERLVETSLKLWPGR

Sequences:

>Translated_214_residues
MEVDTATNAGSQSAAQGGSHKGRPREFCVDAALAAALRVFWSKGYEGASMADLTEAMGITKPSLYAAFGNKEALFNKALD
LYEREKLDYIQAALAAPTARGVAERLMRGALDMYTCPENPNGCLGVIASVACGAEAECIRQAVLERSAAAKRAILDRLTR
AKDEGDFPEDTDPEGLAAFLMAVNQGMSVQAGAGATRAELERLVETSLKLWPGR
>Mature_214_residues
MEVDTATNAGSQSAAQGGSHKGRPREFCVDAALAAALRVFWSKGYEGASMADLTEAMGITKPSLYAAFGNKEALFNKALD
LYEREKLDYIQAALAAPTARGVAERLMRGALDMYTCPENPNGCLGVIASVACGAEAECIRQAVLERSAAAKRAILDRLTR
AKDEGDFPEDTDPEGLAAFLMAVNQGMSVQAGAGATRAELERLVETSLKLWPGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=200, Percent_Identity=34.5, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082397, Length=61, Percent_Identity=47.5409836065574, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22720; Mature: 22720

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVDTATNAGSQSAAQGGSHKGRPREFCVDAALAAALRVFWSKGYEGASMADLTEAMGIT
CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
KPSLYAAFGNKEALFNKALDLYEREKLDYIQAALAAPTARGVAERLMRGALDMYTCPENP
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
NGCLGVIASVACGAEAECIRQAVLERSAAAKRAILDRLTRAKDEGDFPEDTDPEGLAAFL
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
MAVNQGMSVQAGAGATRAELERLVETSLKLWPGR
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEVDTATNAGSQSAAQGGSHKGRPREFCVDAALAAALRVFWSKGYEGASMADLTEAMGIT
CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
KPSLYAAFGNKEALFNKALDLYEREKLDYIQAALAAPTARGVAERLMRGALDMYTCPENP
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
NGCLGVIASVACGAEAECIRQAVLERSAAAKRAILDRLTRAKDEGDFPEDTDPEGLAAFL
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
MAVNQGMSVQAGAGATRAELERLVETSLKLWPGR
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]