| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487738
Identifier: 103487738
GI number: 103487738
Start: 2370952
End: 2371809
Strand: Reverse
Name: 103487738
Synonym: Sala_2257
Alternate gene names: NA
Gene position: 2371809-2370952 (Counterclockwise)
Preceding gene: 103487739
Following gene: 103487730
Centisome position: 70.9
GC content: 69.81
Gene sequence:
>858_bases ATGCCTTATCAGCCCCGCGTCGCGATCCTTGTCCCGGCGCCCGACTATGAGGAAAAATGGCAGCCGGCCTTTGCGCGCAA GGCGGCGGCGCTGACCGCGGCCGGGCTGATCGTCGAGCAGCGCGTGTGGACCGATCCGGGCGACCTCGCGGGGCATGATC TGGTGCTGCCGCTTTTCGCCTGGGGGTATCAGCGCAACGTCGCGGCCTGGTATGGCCTGCTCGACCGGCTGGGGGACGAG GGGCTGCCGGTGGTCAATCCGGTGCCGGTGCTGCGATGGAACAGCGACAAGGCCTATCTTGCCGATCTGGCGGCCAAGGG CGTCGCGGTGGTGCCGACGGTCGACGTGGCGGCGCTCGATGCCGCGGCGCTGGCCGATGCGTGCGCGAGGCTGGGCACCG AAGAGGTCGTGATAAAGCCCGCGATTTCGGGCGGCGCCGACGGCACGCACCGGATCGCGCCCGGCGCCGCGATTCCCGCC GACGCGCTGGGACAGCGCCGCCTCGTCCAGCCCTTGATGCCCGGCATCCTGACCGAGGGCGAAGTCTCGCTCTTCTTCTT CGGTGGCCGCTTCAGCCACGCGATCGTCAAGCGCCCCGCGGCGGGCGATTTTCGCGTGCAGGAACAGTTCGGCGGACGCG AGACGGCATGGGAAGCAAAGGATGCGGCGCGCACACTCGCGGCGATGGCGCTGGCCGCGGCGCCGCTTCCCCCGGCCTAT GCGCGTGTCGACATGGTCGGCGATGCGGCGGGACGCCTGCATCTGATGGAGCTTGAACTGATCGAGCCGTCGCTGTTCCT TCACCATGCGCCCGACAAGGGGGCGGCGTTTGCCCAGGCGGTTTACGCCGCGGTCTGA
Upstream 100 bases:
>100_bases GTGAAGTTCCCAGACCCCTCTCCAACTCCGGCTAGCGAACAGGTTCGCAAGCCTCCATATCCTCTCCCCTGAAGGGGAGA GGGCATCGCGAGATCCACCC
Downstream 100 bases:
>100_bases TCGCTGCGGCGATGCCACAGCCATTGGCGGATCGCCGAAGTGAGGTTCGGCGGATCGTCCGCCTCCATCCGCTCGACATC GATGCGCGCGACGAGCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MPYQPRVAILVPAPDYEEKWQPAFARKAAALTAAGLIVEQRVWTDPGDLAGHDLVLPLFAWGYQRNVAAWYGLLDRLGDE GLPVVNPVPVLRWNSDKAYLADLAAKGVAVVPTVDVAALDAAALADACARLGTEEVVIKPAISGGADGTHRIAPGAAIPA DALGQRRLVQPLMPGILTEGEVSLFFFGGRFSHAIVKRPAAGDFRVQEQFGGRETAWEAKDAARTLAAMALAAAPLPPAY ARVDMVGDAAGRLHLMELELIEPSLFLHHAPDKGAAFAQAVYAAV
Sequences:
>Translated_285_residues MPYQPRVAILVPAPDYEEKWQPAFARKAAALTAAGLIVEQRVWTDPGDLAGHDLVLPLFAWGYQRNVAAWYGLLDRLGDE GLPVVNPVPVLRWNSDKAYLADLAAKGVAVVPTVDVAALDAAALADACARLGTEEVVIKPAISGGADGTHRIAPGAAIPA DALGQRRLVQPLMPGILTEGEVSLFFFGGRFSHAIVKRPAAGDFRVQEQFGGRETAWEAKDAARTLAAMALAAAPLPPAY ARVDMVGDAAGRLHLMELELIEPSLFLHHAPDKGAAFAQAVYAAV >Mature_284_residues PYQPRVAILVPAPDYEEKWQPAFARKAAALTAAGLIVEQRVWTDPGDLAGHDLVLPLFAWGYQRNVAAWYGLLDRLGDEG LPVVNPVPVLRWNSDKAYLADLAAKGVAVVPTVDVAALDAAALADACARLGTEEVVIKPAISGGADGTHRIAPGAAIPAD ALGQRRLVQPLMPGILTEGEVSLFFFGGRFSHAIVKRPAAGDFRVQEQFGGRETAWEAKDAARTLAAMALAAAPLPPAYA RVDMVGDAAGRLHLMELELIEPSLFLHHAPDKGAAFAQAVYAAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30193; Mature: 30062
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00187 TPP_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYQPRVAILVPAPDYEEKWQPAFARKAAALTAAGLIVEQRVWTDPGDLAGHDLVLPLFA CCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH WGYQRNVAAWYGLLDRLGDEGLPVVNPVPVLRWNSDKAYLADLAAKGVAVVPTVDVAALD CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEECCCCHHHHH AAALADACARLGTEEVVIKPAISGGADGTHRIAPGAAIPADALGQRRLVQPLMPGILTEG HHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCC EVSLFFFGGRFSHAIVKRPAAGDFRVQEQFGGRETAWEAKDAARTLAAMALAAAPLPPAY CEEEEEECCCHHHHHHCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH ARVDMVGDAAGRLHLMELELIEPSLFLHHAPDKGAAFAQAVYAAV HHEEEECCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHCC >Mature Secondary Structure PYQPRVAILVPAPDYEEKWQPAFARKAAALTAAGLIVEQRVWTDPGDLAGHDLVLPLFA CCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH WGYQRNVAAWYGLLDRLGDEGLPVVNPVPVLRWNSDKAYLADLAAKGVAVVPTVDVAALD CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEECCCCHHHHH AAALADACARLGTEEVVIKPAISGGADGTHRIAPGAAIPADALGQRRLVQPLMPGILTEG HHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCC EVSLFFFGGRFSHAIVKRPAAGDFRVQEQFGGRETAWEAKDAARTLAAMALAAAPLPPAY CEEEEEECCCHHHHHHCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH ARVDMVGDAAGRLHLMELELIEPSLFLHHAPDKGAAFAQAVYAAV HHEEEECCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA