| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is hflK [H]
Identifier: 103487730
GI number: 103487730
Start: 2362137
End: 2363297
Strand: Reverse
Name: hflK [H]
Synonym: Sala_2249
Alternate gene names: 103487730
Gene position: 2363297-2362137 (Counterclockwise)
Preceding gene: 103487738
Following gene: 103487729
Centisome position: 70.65
GC content: 66.49
Gene sequence:
>1161_bases ATGAGCGACCAGATTGAAGGCAGCATGGGACGCCGCACCCTCCGGGGATTGCGGCAATTTTTCGATTCGATCAGCCAGAT GGCCAACAGCCCGTGGGGCAATGGCCCGGGCAAGGGCGAGGATGACGACGGCAAGGGCGGCGACGGCAAGCGGCCGGGGC CGCGCAACCCCTGGGTCACGCCCGACCCGGCCGACCAGCGCCGCGGGGCAAAACCGCGCGGCCCGTCGGCGCTCGACGAA CTGCTGCGCAAGGGACGTGGCGGTTTCGGCGGCGGCGGTTCGGGCGGCGGCGGGTTCGACTTCGCCGATTCGGGACGAAT ATGGAAATGGGGGATCGTCGCGGTTCTCGCGGTCTGGCTCTTCTTCTCCTCCTTCCACATCGTGCCGCCCGAAAAGGAGG GCGTGGTCACCCGGCTCGGCAGCTATGCGCGCACCGTCGGTCCCGGCGTCAAATTGACCTGGCCGGCGCCGATCGAGCGC ATCCGCATGGAGGACGTCCGCGCGATCCGTACGATGGCGATCGGATCGCCCAAAGCGACCGACGAGAACTTCGTGCTGAC GCGCGACCAGAGCATCGTCGATCTGGCCTATGAGGTCCGCTGGTCGGTGCGCGCGCCCGAGCTGTTCTTTTTCCAGATCG CCAATCCCGAGGACACGATCCGCGAGGTCGCCGAAAGCGCGATGCGCGCGACGGTCGCCAATTTCGACCTTGTGCAGGCG ATCGGCCCCGGCCGCGTCGAGATCGAGGCGCAGGTACAGAGCCGGATGCAGGCGCTGCTCGACGAATATCGCGCCGGCGT GACGATTCAGGGCATCGCGATCCGTCAGGCGGACCCGCCAAGCCAGGTCGACGAGGCGTTCAAGGAAGTCACCGCAGCGC GGCAGGAACGCGAAGCGGCGATCAACCTGGCCCGCGCCTATCAGCAGCAGGTGCTCGAACGCGCGCGCGGCGATACGTCC GCGTTCGACCAGATTTACGAACAATATCGGCTGGCGCCGGAGGTGACCCGCCAGCGGCTTTATTATGAAACGATGGAGGC CGTGTTGTCGAACGTCGACAAGACGATTGTCGAAGCGCGCGGGGTGACCCCCTATCTGCCGCTCAACGAGGTCCAGAGAC GACTGCGCGCGCCCGAAGCCGTGACAAAGGGAGGCGAATGA
Upstream 100 bases:
>100_bases TCGGTCATGTCTGCGCCGAAATAGGGCCGCCGACGCGCTTTGCCAGCCATTTTCGCGCGCACCCCCTGTTAATCGCGCCC GCCGCCCCTATAAAAGCAAT
Downstream 100 bases:
>100_bases TGTTCGCGCCGCTTTTCCGCAATCCCGTGCGCCTGCTGGTCGGCATCGTCGCCCTGCTGGTGCTGTTGTCGATGACGGTG TCGATCGTGCCGGAGGACCG
Product: HflK protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSDQIEGSMGRRTLRGLRQFFDSISQMANSPWGNGPGKGEDDDGKGGDGKRPGPRNPWVTPDPADQRRGAKPRGPSALDE LLRKGRGGFGGGGSGGGGFDFADSGRIWKWGIVAVLAVWLFFSSFHIVPPEKEGVVTRLGSYARTVGPGVKLTWPAPIER IRMEDVRAIRTMAIGSPKATDENFVLTRDQSIVDLAYEVRWSVRAPELFFFQIANPEDTIREVAESAMRATVANFDLVQA IGPGRVEIEAQVQSRMQALLDEYRAGVTIQGIAIRQADPPSQVDEAFKEVTAARQEREAAINLARAYQQQVLERARGDTS AFDQIYEQYRLAPEVTRQRLYYETMEAVLSNVDKTIVEARGVTPYLPLNEVQRRLRAPEAVTKGGE
Sequences:
>Translated_386_residues MSDQIEGSMGRRTLRGLRQFFDSISQMANSPWGNGPGKGEDDDGKGGDGKRPGPRNPWVTPDPADQRRGAKPRGPSALDE LLRKGRGGFGGGGSGGGGFDFADSGRIWKWGIVAVLAVWLFFSSFHIVPPEKEGVVTRLGSYARTVGPGVKLTWPAPIER IRMEDVRAIRTMAIGSPKATDENFVLTRDQSIVDLAYEVRWSVRAPELFFFQIANPEDTIREVAESAMRATVANFDLVQA IGPGRVEIEAQVQSRMQALLDEYRAGVTIQGIAIRQADPPSQVDEAFKEVTAARQEREAAINLARAYQQQVLERARGDTS AFDQIYEQYRLAPEVTRQRLYYETMEAVLSNVDKTIVEARGVTPYLPLNEVQRRLRAPEAVTKGGE >Mature_385_residues SDQIEGSMGRRTLRGLRQFFDSISQMANSPWGNGPGKGEDDDGKGGDGKRPGPRNPWVTPDPADQRRGAKPRGPSALDEL LRKGRGGFGGGGSGGGGFDFADSGRIWKWGIVAVLAVWLFFSSFHIVPPEKEGVVTRLGSYARTVGPGVKLTWPAPIERI RMEDVRAIRTMAIGSPKATDENFVLTRDQSIVDLAYEVRWSVRAPELFFFQIANPEDTIREVAESAMRATVANFDLVQAI GPGRVEIEAQVQSRMQALLDEYRAGVTIQGIAIRQADPPSQVDEAFKEVTAARQEREAAINLARAYQQQVLERARGDTSA FDQIYEQYRLAPEVTRQRLYYETMEAVLSNVDKTIVEARGVTPYLPLNEVQRRLRAPEAVTKGGE
Specific function: HflC and HflK could encode or regulate a protease [H]
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family. HflK subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790616, Length=287, Percent_Identity=30.3135888501742, Blast_Score=143, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR010201 - InterPro: IPR020980 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7; PF12221 HflK_N [H]
EC number: NA
Molecular weight: Translated: 42623; Mature: 42491
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQIEGSMGRRTLRGLRQFFDSISQMANSPWGNGPGKGEDDDGKGGDGKRPGPRNPWVT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDPADQRRGAKPRGPSALDELLRKGRGGFGGGGSGGGGFDFADSGRIWKWGIVAVLAVWL CCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH FFSSFHIVPPEKEGVVTRLGSYARTVGPGVKLTWPAPIERIRMEDVRAIRTMAIGSPKAT HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCC DENFVLTRDQSIVDLAYEVRWSVRAPELFFFQIANPEDTIREVAESAMRATVANFDLVQA CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH IGPGRVEIEAQVQSRMQALLDEYRAGVTIQGIAIRQADPPSQVDEAFKEVTAARQEREAA CCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH INLARAYQQQVLERARGDTSAFDQIYEQYRLAPEVTRQRLYYETMEAVLSNVDKTIVEAR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTPYLPLNEVQRRLRAPEAVTKGGE CCCCCCCHHHHHHHHCCCHHHCCCCC >Mature Secondary Structure SDQIEGSMGRRTLRGLRQFFDSISQMANSPWGNGPGKGEDDDGKGGDGKRPGPRNPWVT CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDPADQRRGAKPRGPSALDELLRKGRGGFGGGGSGGGGFDFADSGRIWKWGIVAVLAVWL CCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH FFSSFHIVPPEKEGVVTRLGSYARTVGPGVKLTWPAPIERIRMEDVRAIRTMAIGSPKAT HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCC DENFVLTRDQSIVDLAYEVRWSVRAPELFFFQIANPEDTIREVAESAMRATVANFDLVQA CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH IGPGRVEIEAQVQSRMQALLDEYRAGVTIQGIAIRQADPPSQVDEAFKEVTAARQEREAA CCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH INLARAYQQQVLERARGDTSAFDQIYEQYRLAPEVTRQRLYYETMEAVLSNVDKTIVEAR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTPYLPLNEVQRRLRAPEAVTKGGE CCCCCCCHHHHHHHHCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]