| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is iorB [H]
Identifier: 103487733
GI number: 103487733
Start: 2364873
End: 2367161
Strand: Direct
Name: iorB [H]
Synonym: Sala_2252
Alternate gene names: 103487733
Gene position: 2364873-2367161 (Clockwise)
Preceding gene: 103487732
Following gene: 103487734
Centisome position: 70.7
GC content: 70.99
Gene sequence:
>2289_bases ATGGCGGGCATTCGCGACAGGGTTGGAAAGCGCAAATCGCGGCTGCCGCACGTCAGCCGCCGCCAGATGCTCGTCGGCGC GACCGCGGCGGGCGGCCTCGCGATCGCATGGGGCCTGTGGCCGCGCGACTACCAGCCGAATCTCACCGCCGCACCGGGCG AGCATGTCTTCAACGCCTTTCTGAAAATCGGCGACGACGGGCGGATCAGCGCGATCGTCCCGCAGTGCGAAATGGGTCAG GGCGTCACCACGCTGCTGCCACAGATCATGGCCGACGAACTGGGCGCCGACTGGCGCACCATCGCGGTCGAAAGCGCGCC GATCAGTCCCCTTTATACCAACACGCTGCTGGTCGACGAGGACAGCGCGGTCTTTACGCCGCGCGCGCTCGTCCCCGATT TCGTGTCCGACGTGCGCCGCTGGGTGCGCCGCGAGTGGGCCGTGCGGAACGCCGTGATGCTGACCGCCAATTCCTCGTCG GTGCGGATGTTCGAGGAACCGTGCCGCGCCGCCGCGGCGCAGGCGCGCGCACTGCTGATGATGGCCGCCGCCGATCGCTG GGACGCCGACTGGCAGGAGTGCGACACGCAGGACGGCTTTGTCATCCACGGGCGCAAGCGTCTGCGCTTTGCCGAGGTCG CGGCTGCGGCGGCGACCTTCGAACCGCCCGCCGAACCCATGTACCGCGCGTCTGCGCCGGACCCGCTCTATGGCAAGGAG CTGACGCGGCTCGACCTGCCCGCAAAGGTCGACGGGTCGGCCAATTATGCCGCCGACATCCGCCTGCCCGACATGGTGTT CGCCGCCATCCGCCAGGGACCGCTCGGCGCGACGCGACTGACGGGCATCGACCGCACGGCGGGACTCGCTTCGCCCGGCC TGCTCCATGTCGTGACGCACGAACGCTGGGTTGCCGCCGTTGCGCGCAACTGGTGGGCGGCGAACCGCGCGCTCGACCGC TTTGCGCCGGTGTTCGAAACCCGGGGCACGCCGATCTCGACCGATCGTATCGACCGTGCCCTCAAGGCCGCGCTGAAGGC CGACGGCTTTCGCATCGTCAGCGAAGGCGACGTCGGCGAAGCGATGGAGGGGCGTACGCGCATCGCCGCCGAATATGCCG TCGCGCCCGCACTCCACGCCCCCATCGAAACGCGCAGCGCGACCGCCGCGCCCGATGGCCGCGGGCTGCGGCTCTGGGTC GCGACGCAGGCGCCGACGCAGTGCCGCGACGCGGTTGCGCGGGCCACGGGCTTGCCCGCCGCCGACGTCACGCTGTTCCC GATGATGGCGGGCGGCTCGTTCGACGCCTGCCTCGATCACAGCGTCGCGGTACAGGCGGCAATCATCGCGCTTGAAATCA AACGCCCGGTCCAGCTCGCCTGGTCGCGGGCCGAGGAAATCATGCGCCTGCCGCCGCGCGCGCCCGCGCGGGCGAAACTT ACCGCAACGCTCAACGCCGCGGGCGGGATCGACGCGCTGGTGGCGCGGATCGCCGTCCCCTCGACCAACCATGAGGTGCG CGCGCGACTGTTCGACAATAGCCCCGCCGACGTCGCGCAGCGCGCCGCCGCCGGCCGCGCCGATGCGGCGGCGGTCGAGG GCGCCGCGAAGCATTATGCCATCCCCAACCGGGCGGTCGATCATTGCCCGGCGGACATCGGCCTGCCGACGGGGCGCTGG CGCGGCAATGCCGACAGCTATACCGCTTTCTTTACCGAATGTTTCGTCGACGAAATGGCGGTGCGCGCCGGGTCGGACCC GCTTTCCTATCGCATGGCGATGCTCGGCGAGGCGCCGCTGCTCGCGCGCTGCCTGCTCACCGCCACCAGCCTCGGTGGCT GGGAGGGCGGGCTGGCGGGCAGCGCGCAGGGGCTGGCCTGCCACTCGATGCGCGGCAGCCACATCGCGCTGATGGCGACC GCGCGGCCAAGCGACCGGGGTTTGCAGGTCGAACAACTGGTCGCGGTCGTCGACGCGGGCCGCCTCGTCAATCCGGCGAT CGCGCGTCAACAGGTCGAGGGGGGGCTGATCTTTGGCCTCGCCGCCGCGGTCGGCGCGACGACCGATTATCAGGGCGGGC TTGCCACCGCGCGCAAGCTCGGCCAGCTCGGCCTGCCGCGCCTGTCTCAGACGCCCGAAATCCTCGTCGAGTTTGTCGAC AGCGACCGCGAGCCCGGCGGGCTTGGCGAAATCGGCGTGCCCGTCGTCGCCCCCGCGATCGCCAACGCAATGTTCGCCGC GACGGGCCGCCGCATTCGCCGCATCCCGCTGTCGGGGCACCCGCTATGA
Upstream 100 bases:
>100_bases TCGGCTTGTTGCGCTAACCATCCCGCTTTCCCGGAAGCGAGAGGGTTTGCATTCCGAAAGCCTTTGCTCTCGCAACTCGC CCCGCTTATCAGCGTCGGCG
Downstream 100 bases:
>100_bases CCCTGCCCCCCGATCATCCTCCCGTTCGGCCGCCCCGCGTCGCCGTGCTGCTCGTCAACCTCGGCACCCCCGACGCGCCC GATCCGCCGTCGGTGCGCCG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MAGIRDRVGKRKSRLPHVSRRQMLVGATAAGGLAIAWGLWPRDYQPNLTAAPGEHVFNAFLKIGDDGRISAIVPQCEMGQ GVTTLLPQIMADELGADWRTIAVESAPISPLYTNTLLVDEDSAVFTPRALVPDFVSDVRRWVRREWAVRNAVMLTANSSS VRMFEEPCRAAAAQARALLMMAAADRWDADWQECDTQDGFVIHGRKRLRFAEVAAAAATFEPPAEPMYRASAPDPLYGKE LTRLDLPAKVDGSANYAADIRLPDMVFAAIRQGPLGATRLTGIDRTAGLASPGLLHVVTHERWVAAVARNWWAANRALDR FAPVFETRGTPISTDRIDRALKAALKADGFRIVSEGDVGEAMEGRTRIAAEYAVAPALHAPIETRSATAAPDGRGLRLWV ATQAPTQCRDAVARATGLPAADVTLFPMMAGGSFDACLDHSVAVQAAIIALEIKRPVQLAWSRAEEIMRLPPRAPARAKL TATLNAAGGIDALVARIAVPSTNHEVRARLFDNSPADVAQRAAAGRADAAAVEGAAKHYAIPNRAVDHCPADIGLPTGRW RGNADSYTAFFTECFVDEMAVRAGSDPLSYRMAMLGEAPLLARCLLTATSLGGWEGGLAGSAQGLACHSMRGSHIALMAT ARPSDRGLQVEQLVAVVDAGRLVNPAIARQQVEGGLIFGLAAAVGATTDYQGGLATARKLGQLGLPRLSQTPEILVEFVD SDREPGGLGEIGVPVVAPAIANAMFAATGRRIRRIPLSGHPL
Sequences:
>Translated_762_residues MAGIRDRVGKRKSRLPHVSRRQMLVGATAAGGLAIAWGLWPRDYQPNLTAAPGEHVFNAFLKIGDDGRISAIVPQCEMGQ GVTTLLPQIMADELGADWRTIAVESAPISPLYTNTLLVDEDSAVFTPRALVPDFVSDVRRWVRREWAVRNAVMLTANSSS VRMFEEPCRAAAAQARALLMMAAADRWDADWQECDTQDGFVIHGRKRLRFAEVAAAAATFEPPAEPMYRASAPDPLYGKE LTRLDLPAKVDGSANYAADIRLPDMVFAAIRQGPLGATRLTGIDRTAGLASPGLLHVVTHERWVAAVARNWWAANRALDR FAPVFETRGTPISTDRIDRALKAALKADGFRIVSEGDVGEAMEGRTRIAAEYAVAPALHAPIETRSATAAPDGRGLRLWV ATQAPTQCRDAVARATGLPAADVTLFPMMAGGSFDACLDHSVAVQAAIIALEIKRPVQLAWSRAEEIMRLPPRAPARAKL TATLNAAGGIDALVARIAVPSTNHEVRARLFDNSPADVAQRAAAGRADAAAVEGAAKHYAIPNRAVDHCPADIGLPTGRW RGNADSYTAFFTECFVDEMAVRAGSDPLSYRMAMLGEAPLLARCLLTATSLGGWEGGLAGSAQGLACHSMRGSHIALMAT ARPSDRGLQVEQLVAVVDAGRLVNPAIARQQVEGGLIFGLAAAVGATTDYQGGLATARKLGQLGLPRLSQTPEILVEFVD SDREPGGLGEIGVPVVAPAIANAMFAATGRRIRRIPLSGHPL >Mature_761_residues AGIRDRVGKRKSRLPHVSRRQMLVGATAAGGLAIAWGLWPRDYQPNLTAAPGEHVFNAFLKIGDDGRISAIVPQCEMGQG VTTLLPQIMADELGADWRTIAVESAPISPLYTNTLLVDEDSAVFTPRALVPDFVSDVRRWVRREWAVRNAVMLTANSSSV RMFEEPCRAAAAQARALLMMAAADRWDADWQECDTQDGFVIHGRKRLRFAEVAAAAATFEPPAEPMYRASAPDPLYGKEL TRLDLPAKVDGSANYAADIRLPDMVFAAIRQGPLGATRLTGIDRTAGLASPGLLHVVTHERWVAAVARNWWAANRALDRF APVFETRGTPISTDRIDRALKAALKADGFRIVSEGDVGEAMEGRTRIAAEYAVAPALHAPIETRSATAAPDGRGLRLWVA TQAPTQCRDAVARATGLPAADVTLFPMMAGGSFDACLDHSVAVQAAIIALEIKRPVQLAWSRAEEIMRLPPRAPARAKLT ATLNAAGGIDALVARIAVPSTNHEVRARLFDNSPADVAQRAAAGRADAAAVEGAAKHYAIPNRAVDHCPADIGLPTGRWR GNADSYTAFFTECFVDEMAVRAGSDPLSYRMAMLGEAPLLARCLLTATSLGGWEGGLAGSAQGLACHSMRGSHIALMATA RPSDRGLQVEQLVAVVDAGRLVNPAIARQQVEGGLIFGLAAAVGATTDYQGGLATARKLGQLGLPRLSQTPEILVEFVDS DREPGGLGEIGVPVVAPAIANAMFAATGRRIRRIPLSGHPL
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 81146; Mature: 81014
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGIRDRVGKRKSRLPHVSRRQMLVGATAAGGLAIAWGLWPRDYQPNLTAAPGEHVFNAF CCCHHHHHHHHHHHCCCHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH LKIGDDGRISAIVPQCEMGQGVTTLLPQIMADELGADWRTIAVESAPISPLYTNTLLVDE HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCEEEEEC DSAVFTPRALVPDFVSDVRRWVRREWAVRNAVMLTANSSSVRMFEEPCRAAAAQARALLM CCCEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH MAAADRWDADWQECDTQDGFVIHGRKRLRFAEVAAAAATFEPPAEPMYRASAPDPLYGKE HHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTRLDLPAKVDGSANYAADIRLPDMVFAAIRQGPLGATRLTGIDRTAGLASPGLLHVVTH HHEECCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEEHH ERWVAAVARNWWAANRALDRFAPVFETRGTPISTDRIDRALKAALKADGFRIVSEGDVGE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC AMEGRTRIAAEYAVAPALHAPIETRSATAAPDGRGLRLWVATQAPTQCRDAVARATGLPA HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCC ADVTLFPMMAGGSFDACLDHSVAVQAAIIALEIKRPVQLAWSRAEEIMRLPPRAPARAKL CCEEEEEEECCCCHHHHHCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEE TATLNAAGGIDALVARIAVPSTNHEVRARLFDNSPADVAQRAAAGRADAAAVEGAAKHYA EEEECCCCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHCC IPNRAVDHCPADIGLPTGRWRGNADSYTAFFTECFVDEMAVRAGSDPLSYRMAMLGEAPL CCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH LARCLLTATSLGGWEGGLAGSAQGLACHSMRGSHIALMATARPSDRGLQVEQLVAVVDAG HHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC RLVNPAIARQQVEGGLIFGLAAAVGATTDYQGGLATARKLGQLGLPRLSQTPEILVEFVD CCCCHHHHHHHHCCCHHEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH SDREPGGLGEIGVPVVAPAIANAMFAATGRRIRRIPLSGHPL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC >Mature Secondary Structure AGIRDRVGKRKSRLPHVSRRQMLVGATAAGGLAIAWGLWPRDYQPNLTAAPGEHVFNAF CCHHHHHHHHHHHCCCHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH LKIGDDGRISAIVPQCEMGQGVTTLLPQIMADELGADWRTIAVESAPISPLYTNTLLVDE HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCEEEEEC DSAVFTPRALVPDFVSDVRRWVRREWAVRNAVMLTANSSSVRMFEEPCRAAAAQARALLM CCCEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH MAAADRWDADWQECDTQDGFVIHGRKRLRFAEVAAAAATFEPPAEPMYRASAPDPLYGKE HHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTRLDLPAKVDGSANYAADIRLPDMVFAAIRQGPLGATRLTGIDRTAGLASPGLLHVVTH HHEECCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEEHH ERWVAAVARNWWAANRALDRFAPVFETRGTPISTDRIDRALKAALKADGFRIVSEGDVGE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC AMEGRTRIAAEYAVAPALHAPIETRSATAAPDGRGLRLWVATQAPTQCRDAVARATGLPA HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCC ADVTLFPMMAGGSFDACLDHSVAVQAAIIALEIKRPVQLAWSRAEEIMRLPPRAPARAKL CCEEEEEEECCCCHHHHHCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEE TATLNAAGGIDALVARIAVPSTNHEVRARLFDNSPADVAQRAAAGRADAAAVEGAAKHYA EEEECCCCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHCC IPNRAVDHCPADIGLPTGRWRGNADSYTAFFTECFVDEMAVRAGSDPLSYRMAMLGEAPL CCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH LARCLLTATSLGGWEGGLAGSAQGLACHSMRGSHIALMATARPSDRGLQVEQLVAVVDAG HHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCC RLVNPAIARQQVEGGLIFGLAAAVGATTDYQGGLATARKLGQLGLPRLSQTPEILVEFVD CCCCHHHHHHHHCCCHHEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH SDREPGGLGEIGVPVVAPAIANAMFAATGRRIRRIPLSGHPL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]