| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is hemH [H]
Identifier: 103487734
GI number: 103487734
Start: 2367158
End: 2368153
Strand: Direct
Name: hemH [H]
Synonym: Sala_2253
Alternate gene names: 103487734
Gene position: 2367158-2368153 (Clockwise)
Preceding gene: 103487733
Following gene: 103487735
Centisome position: 70.76
GC content: 69.08
Gene sequence:
>996_bases ATGACCCTGCCCCCCGATCATCCTCCCGTTCGGCCGCCCCGCGTCGCCGTGCTGCTCGTCAACCTCGGCACCCCCGACGC GCCCGATCCGCCGTCGGTGCGCCGCTATCTCAGACAATTTCTGTCCGACCGGCGTGTCGTCGAAATCCCGCCAATCCTGT GGCAGCCGATCCTGCGCGGCATCATCCTGACGACACGGCCGAAAAAATCGGCGCACGCCTATGCGCAGGTGTGGACCGGG GACGGTTCGCCGCTCGCCGCGATCACCCGCGCACAGGCGGCGGCGCTGCAAGGCGCGCTCGGCGAAGGCGTCGCGGTCGC TTATGCGATGCGTTACGGCGAACCGGCGATCGGCCGCGCGATCGACGCGCTGACTGCCGCGGGGTGCCGCCGCATCCTCG TCGCGCCGCTCTATCCGCAATATTGCGCGGCGACGACCGCGACCGTCGTCGATGCCGCCGCCGACCATCTGAAGACGCTG CGCTGGCAGCCCGCGCTGCGTTTCCTGCCGCCTTACCACGACGATCCCGCCTATCTGGCGGCGCTGAAGGCCTCGGTCGA AGCGGGGCTTGCGACGCTCGATTTCATCCCCGACGTGCTGCTCGCGAGCTTTCACGGGATGCCCGAGCGCACGCTCCATC TCGGCGATCCCTATCATTGCCAGTGCCAAAAGACCGCGCGCCTGCTTTCGGACATGCTCGGTCGCCCCGTCGAGGTCGCC TTCCAGTCGCGCTTCGGCCGCGCCAAATGGCTCGAACCCGCGACCGATACGCGGCTCGAAGCGCTGGGCGCGGCGGGCAA GAGCGTTGCGGTCTTTGCGCCGGGCTTTGCCGCCGACTGCCTCGAAACGCTCGAGGAGCTGGCGATGCGCGGCAAGGAAC AGTTCATGGCGGCGGGGGGCAAGCAATTCGCCTACCTCCCCTGCCTCAACGCCGACGCTCCCGGCATGGCGATGATCGAG GCGCTCGTCCGCCGCGAGCTGGCGGGCTGGATCTGA
Upstream 100 bases:
>100_bases GCGAAATCGGCGTGCCCGTCGTCGCCCCCGCGATCGCCAACGCAATGTTCGCCGCGACGGGCCGCCGCATTCGCCGCATC CCGCTGTCGGGGCACCCGCT
Downstream 100 bases:
>100_bases CGCGCCGTCGCTTACCAACTGTTTAGGTCGATGCGCTAAATTACTCCATCGTGGCGCCGATCCGGCGCGGCGTCGCCCGT TGGAGTGATGCAATGAACGA
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTLPPDHPPVRPPRVAVLLVNLGTPDAPDPPSVRRYLRQFLSDRRVVEIPPILWQPILRGIILTTRPKKSAHAYAQVWTG DGSPLAAITRAQAAALQGALGEGVAVAYAMRYGEPAIGRAIDALTAAGCRRILVAPLYPQYCAATTATVVDAAADHLKTL RWQPALRFLPPYHDDPAYLAALKASVEAGLATLDFIPDVLLASFHGMPERTLHLGDPYHCQCQKTARLLSDMLGRPVEVA FQSRFGRAKWLEPATDTRLEALGAAGKSVAVFAPGFAADCLETLEELAMRGKEQFMAAGGKQFAYLPCLNADAPGMAMIE ALVRRELAGWI
Sequences:
>Translated_331_residues MTLPPDHPPVRPPRVAVLLVNLGTPDAPDPPSVRRYLRQFLSDRRVVEIPPILWQPILRGIILTTRPKKSAHAYAQVWTG DGSPLAAITRAQAAALQGALGEGVAVAYAMRYGEPAIGRAIDALTAAGCRRILVAPLYPQYCAATTATVVDAAADHLKTL RWQPALRFLPPYHDDPAYLAALKASVEAGLATLDFIPDVLLASFHGMPERTLHLGDPYHCQCQKTARLLSDMLGRPVEVA FQSRFGRAKWLEPATDTRLEALGAAGKSVAVFAPGFAADCLETLEELAMRGKEQFMAAGGKQFAYLPCLNADAPGMAMIE ALVRRELAGWI >Mature_330_residues TLPPDHPPVRPPRVAVLLVNLGTPDAPDPPSVRRYLRQFLSDRRVVEIPPILWQPILRGIILTTRPKKSAHAYAQVWTGD GSPLAAITRAQAAALQGALGEGVAVAYAMRYGEPAIGRAIDALTAAGCRRILVAPLYPQYCAATTATVVDAAADHLKTLR WQPALRFLPPYHDDPAYLAALKASVEAGLATLDFIPDVLLASFHGMPERTLHLGDPYHCQCQKTARLLSDMLGRPVEVAF QSRFGRAKWLEPATDTRLEALGAAGKSVAVFAPGFAADCLETLEELAMRGKEQFMAAGGKQFAYLPCLNADAPGMAMIEA LVRRELAGWI
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=307, Percent_Identity=25.7328990228013, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI60499025, Length=301, Percent_Identity=25.5813953488372, Blast_Score=81, Evalue=1e-15, Organism=Escherichia coli, GI1786681, Length=318, Percent_Identity=46.2264150943396, Blast_Score=253, Evalue=1e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 35774; Mature: 35643
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPPDHPPVRPPRVAVLLVNLGTPDAPDPPSVRRYLRQFLSDRRVVEIPPILWQPILRG CCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCC IILTTRPKKSAHAYAQVWTGDGSPLAAITRAQAAALQGALGEGVAVAYAMRYGEPAIGRA EEEECCCCCHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH IDALTAAGCRRILVAPLYPQYCAATTATVVDAAADHLKTLRWQPALRFLPPYHDDPAYLA HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHH ALKASVEAGLATLDFIPDVLLASFHGMPERTLHLGDPYHCQCQKTARLLSDMLGRPVEVA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCHHHH FQSRFGRAKWLEPATDTRLEALGAAGKSVAVFAPGFAADCLETLEELAMRGKEQFMAAGG HHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHCCC KQFAYLPCLNADAPGMAMIEALVRRELAGWI CCEEEEECCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLPPDHPPVRPPRVAVLLVNLGTPDAPDPPSVRRYLRQFLSDRRVVEIPPILWQPILRG CCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCC IILTTRPKKSAHAYAQVWTGDGSPLAAITRAQAAALQGALGEGVAVAYAMRYGEPAIGRA EEEECCCCCHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH IDALTAAGCRRILVAPLYPQYCAATTATVVDAAADHLKTLRWQPALRFLPPYHDDPAYLA HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHH ALKASVEAGLATLDFIPDVLLASFHGMPERTLHLGDPYHCQCQKTARLLSDMLGRPVEVA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCHHHH FQSRFGRAKWLEPATDTRLEALGAAGKSVAVFAPGFAADCLETLEELAMRGKEQFMAAGG HHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCHHHHHHCCC KQFAYLPCLNADAPGMAMIEALVRRELAGWI CCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA