| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487701
Identifier: 103487701
GI number: 103487701
Start: 2330709
End: 2331629
Strand: Direct
Name: 103487701
Synonym: Sala_2220
Alternate gene names: NA
Gene position: 2330709-2331629 (Clockwise)
Preceding gene: 103487700
Following gene: 103487702
Centisome position: 69.67
GC content: 72.42
Gene sequence:
>921_bases ATGACGCACCGCACCCTCGCCATGACCGGCGCAACCGGCTTTGTCGGCGGCGCGACGCTGCACCGCGCCGTCGAGGCGGG CTGGCACGTCCGCGCGCTGACACGCCGCCCGCAGGGCGAACGCGAGGGCGTAACCTGGATCGCCGGCGCGCTCGACAAGC CCGACAGCCTCGCCGACATGGTGGCGGGGGCCGATGTCGTCATGCACATCGCGGGCGTCGTCAATGTCCCGACCCGCGCC GCCTTCGAGGCGGGCAATGCGACCGCAACCGCCAATGTGATCGCCGCCGCACGCGATGCCCATATATCGCGCTTCGTCCA CGTCTCCTCGCTCGCGGCGCGCGAGCCAGGCCTTTCCGACTATGGCTGGTCGAAGGAGCGCGCCGAGGCCGTCGTGCAGG CGAGCGGGCTCGACTGGACGATCGTGCGCCCGCCTGCGGTGTTCGGCCCCGGCGATACCGAGATGCTCGACCTGTTCCGC ATGGTTCGCCGGGGCGTCGCCCTCCTGCCACCGCCGGGCCGCATGTCGGCGATCTATGTCGACGACCTTGCCCGCCTGCT CGTTGTGCTCGCAGCCGACAAGGGGACGAGTTTCGGCCGGATCTATGAGCCCGACGACGGCACCCCCGGCGGCTGGTCGC ACCGCGGCTTTGCCCGCGCGATCGGGCGGGCGGTCGGCCGCGCCCATGTGCCGACGCTCGCCGCGCCGGCGCTGCTGCTC AAGGTCGGCGGGCGGATCGACCGGTTCATCCGCCGCGACCGCGCCAAGCTGACCCCCGACCGTGCGCGCTATATCGTGCA TCCCGACTGGGTGGTGGCCGATGGCGCCCGTCCGCCCGCCACAATCTGGCGCCCGGAGCGCGAGACCGACGAGGCGCTCG CCGAAACGGCGCGCTGGTATCGCCGCGAAGGCTGGCTCTGA
Upstream 100 bases:
>100_bases TGGTGGAGGGGCACGCGCAGCCAAATGCGGCGTTCGACCTCCTGCGCCCCTCCCCCATGCTTCGCATGGCGCCCCTCCCC GTACCGGGGAAGAACGTCTT
Downstream 100 bases:
>100_bases CCCGTAATCCCGACCCAAGCAGCTCACCACAATCGTCATCCCGGCGAAGGCCGGGATGACAGATTGAGGGAATACCGACC GCCCATGCGCTCCCATCGCC
Product: Male sterility-like protein
Products: NA
Alternate protein names: NADH-Ubiquinone Oxidoreductase; Epimerase; Male Sterility-Like Protein; Oxidoreductase; UDP-Glucose 4-Epimerase; Nucleoside-Diphosphate-Sugar Epimerase; NAD Dependent Epimerase; NAD Dependent Epimerase/Dehydratase
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MTHRTLAMTGATGFVGGATLHRAVEAGWHVRALTRRPQGEREGVTWIAGALDKPDSLADMVAGADVVMHIAGVVNVPTRA AFEAGNATATANVIAAARDAHISRFVHVSSLAAREPGLSDYGWSKERAEAVVQASGLDWTIVRPPAVFGPGDTEMLDLFR MVRRGVALLPPPGRMSAIYVDDLARLLVVLAADKGTSFGRIYEPDDGTPGGWSHRGFARAIGRAVGRAHVPTLAAPALLL KVGGRIDRFIRRDRAKLTPDRARYIVHPDWVVADGARPPATIWRPERETDEALAETARWYRREGWL
Sequences:
>Translated_306_residues MTHRTLAMTGATGFVGGATLHRAVEAGWHVRALTRRPQGEREGVTWIAGALDKPDSLADMVAGADVVMHIAGVVNVPTRA AFEAGNATATANVIAAARDAHISRFVHVSSLAAREPGLSDYGWSKERAEAVVQASGLDWTIVRPPAVFGPGDTEMLDLFR MVRRGVALLPPPGRMSAIYVDDLARLLVVLAADKGTSFGRIYEPDDGTPGGWSHRGFARAIGRAVGRAHVPTLAAPALLL KVGGRIDRFIRRDRAKLTPDRARYIVHPDWVVADGARPPATIWRPERETDEALAETARWYRREGWL >Mature_305_residues THRTLAMTGATGFVGGATLHRAVEAGWHVRALTRRPQGEREGVTWIAGALDKPDSLADMVAGADVVMHIAGVVNVPTRAA FEAGNATATANVIAAARDAHISRFVHVSSLAAREPGLSDYGWSKERAEAVVQASGLDWTIVRPPAVFGPGDTEMLDLFRM VRRGVALLPPPGRMSAIYVDDLARLLVVLAADKGTSFGRIYEPDDGTPGGWSHRGFARAIGRAVGRAHVPTLAAPALLLK VGGRIDRFIRRDRAKLTPDRARYIVHPDWVVADGARPPATIWRPERETDEALAETARWYRREGWL
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33152; Mature: 33021
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHRTLAMTGATGFVGGATLHRAVEAGWHVRALTRRPQGEREGVTWIAGALDKPDSLADM CCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEECCCCCCHHHHHH VAGADVVMHIAGVVNVPTRAAFEAGNATATANVIAAARDAHISRFVHVSSLAAREPGLSD HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YGWSKERAEAVVQASGLDWTIVRPPAVFGPGDTEMLDLFRMVRRGVALLPPPGRMSAIYV CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEHH DDLARLLVVLAADKGTSFGRIYEPDDGTPGGWSHRGFARAIGRAVGRAHVPTLAAPALLL HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH KVGGRIDRFIRRDRAKLTPDRARYIVHPDWVVADGARPPATIWRPERETDEALAETARWY HHCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RREGWL HHCCCC >Mature Secondary Structure THRTLAMTGATGFVGGATLHRAVEAGWHVRALTRRPQGEREGVTWIAGALDKPDSLADM CCCEEEEECCCCCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEECCCCCCHHHHHH VAGADVVMHIAGVVNVPTRAAFEAGNATATANVIAAARDAHISRFVHVSSLAAREPGLSD HHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YGWSKERAEAVVQASGLDWTIVRPPAVFGPGDTEMLDLFRMVRRGVALLPPPGRMSAIYV CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEHH DDLARLLVVLAADKGTSFGRIYEPDDGTPGGWSHRGFARAIGRAVGRAHVPTLAAPALLL HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH KVGGRIDRFIRRDRAKLTPDRARYIVHPDWVVADGARPPATIWRPERETDEALAETARWY HHCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RREGWL HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA