| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is aroH [H]
Identifier: 103487693
GI number: 103487693
Start: 2322722
End: 2324095
Strand: Direct
Name: aroH [H]
Synonym: Sala_2212
Alternate gene names: 103487693
Gene position: 2322722-2324095 (Clockwise)
Preceding gene: 103487689
Following gene: 103487696
Centisome position: 69.44
GC content: 65.07
Gene sequence:
>1374_bases ATGACGAAAAACTGGCAACCGCATAGCTGGCGCACGCACGAGGCCCGCCAGCTGCCCACCTATCGCGACGCCGATGCACT CGCGGCCGCCGAACGCGAGCTGGCGAACTATCCGCCGCTCGTCTTTGCGGGCGAGGCGCGCGAACTGACGAACGAACTCG CGCGCGTCGCGGAGGGCAGGGCGTTCCTGCTCCAGGGCGGCGACTGCGCCGAAAGCTTTGCCGAGTTCCACCCGAACAAT ATCCGCGACACATTTCGTGTGCTGCTCCAGATGGCGGTGGTGCTGACCTTCGCCTCGAAAATGCCCGTGGTAAAGCTCGG CCGCATGGCGGGGCAGTTCGCCAAGCCGCGTTCGGCGGACATGGAAGAGGTGGATGGCGTCGCGCTGCCCAGCTATCGCG GCGACATCATCAACGACATCGCGTTCGAGGAAGCCGGCCGCGAGCCCGACCCCGCGCGGATGGTCAAGGCCTACAACCAG TCGGCGGCGACGCTCAACCTGCTGCGCGCTTTCGCGGGCGGTGGCTATGCCAATCTGCACCAGGTCAACGCCTGGACGCA CGACTTCATGGACCGCAGCCCGTGGGCGAAGAAATATCAGGAAACCGCAGGCCGCATTTCCGAAGCGCTCGCCTTCATGG AAGCGTGCGGCGTGACGCCCGAAACGGTTCCGCAGATCAAGGGCACCAGCTTCTACACCAGCCATGAGGCGCTGCTCCTC CCCTATGAGCAGGCGCTGACCCGGCAGGACAGCCTGACCGGCGGCTGGTACGACACATCGGGCCACTTCCTGTGGGTCGG CGACCGCACCCGTTTCGAAGGATCAGCGCATATCGAATATCTCCGCGGGATCGGCAATCCGGTCGGCATGAAATGCGGAC CGAGCCTCGAACCCGACGTGCTGCTGCGCCTGCTCGACACGCTGAATCCCAACCATGTGCCCGGCCGCATGACGCTCATC ACGCGCTATGGCCACGACAAGATCGAGGCGCATCTGCCCAGGCTCGTGCGCGCGGTGAAGGAATCGGGCCATCCCGTCGT CTGGTCGTGCGACCCGATGCACGGCAATGTCATCAAGACCTCGACCGGCTACAAGACGCGCCCGTTCGAGCGCATCCTCG CCGAAGTGCGCGGCTTCTTCGCCGTCCACCGCGCCGAGGGCACGCATGGCGGCGGCATCCATATCGAGATGACCGGCCAG AATGTCACCGAATGCACCGGCGGCGCGATGGACGTGACCCAGATGGACCTTGCCGACCGCTATCACACGCATTGCGACCC GCGTTTGAATGCGGGGCAGAGCCTCGAACTCGCCTTCCTGCTGGCGGAGATGCTCAATCAGGAAATGAGCGAGCGGGCGA AGCAGGCGGCGTAA
Upstream 100 bases:
>100_bases ACGATAATGCTAATTTTCAGCCTCGCGCGCTCGGCAAACATTGCGCCCGACGGGCATTCACGCCATGGGGCGCATGATTC GAAAATGAAATGACAGGCAG
Downstream 100 bases:
>100_bases GCCACTTCGTCATTGCGAGCGAAGCGAAGCAATCTCCAGCCCTCGACCTTTGCGTAAGATCGAGGGCTGGAGATTGCCGC GTCGCCTCCGGCTCCTCGCA
Product: phospho-2-dehydro-3-deoxyheptonate aldolase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MTKNWQPHSWRTHEARQLPTYRDADALAAAERELANYPPLVFAGEARELTNELARVAEGRAFLLQGGDCAESFAEFHPNN IRDTFRVLLQMAVVLTFASKMPVVKLGRMAGQFAKPRSADMEEVDGVALPSYRGDIINDIAFEEAGREPDPARMVKAYNQ SAATLNLLRAFAGGGYANLHQVNAWTHDFMDRSPWAKKYQETAGRISEALAFMEACGVTPETVPQIKGTSFYTSHEALLL PYEQALTRQDSLTGGWYDTSGHFLWVGDRTRFEGSAHIEYLRGIGNPVGMKCGPSLEPDVLLRLLDTLNPNHVPGRMTLI TRYGHDKIEAHLPRLVRAVKESGHPVVWSCDPMHGNVIKTSTGYKTRPFERILAEVRGFFAVHRAEGTHGGGIHIEMTGQ NVTECTGGAMDVTQMDLADRYHTHCDPRLNAGQSLELAFLLAEMLNQEMSERAKQAA
Sequences:
>Translated_457_residues MTKNWQPHSWRTHEARQLPTYRDADALAAAERELANYPPLVFAGEARELTNELARVAEGRAFLLQGGDCAESFAEFHPNN IRDTFRVLLQMAVVLTFASKMPVVKLGRMAGQFAKPRSADMEEVDGVALPSYRGDIINDIAFEEAGREPDPARMVKAYNQ SAATLNLLRAFAGGGYANLHQVNAWTHDFMDRSPWAKKYQETAGRISEALAFMEACGVTPETVPQIKGTSFYTSHEALLL PYEQALTRQDSLTGGWYDTSGHFLWVGDRTRFEGSAHIEYLRGIGNPVGMKCGPSLEPDVLLRLLDTLNPNHVPGRMTLI TRYGHDKIEAHLPRLVRAVKESGHPVVWSCDPMHGNVIKTSTGYKTRPFERILAEVRGFFAVHRAEGTHGGGIHIEMTGQ NVTECTGGAMDVTQMDLADRYHTHCDPRLNAGQSLELAFLLAEMLNQEMSERAKQAA >Mature_456_residues TKNWQPHSWRTHEARQLPTYRDADALAAAERELANYPPLVFAGEARELTNELARVAEGRAFLLQGGDCAESFAEFHPNNI RDTFRVLLQMAVVLTFASKMPVVKLGRMAGQFAKPRSADMEEVDGVALPSYRGDIINDIAFEEAGREPDPARMVKAYNQS AATLNLLRAFAGGGYANLHQVNAWTHDFMDRSPWAKKYQETAGRISEALAFMEACGVTPETVPQIKGTSFYTSHEALLLP YEQALTRQDSLTGGWYDTSGHFLWVGDRTRFEGSAHIEYLRGIGNPVGMKCGPSLEPDVLLRLLDTLNPNHVPGRMTLIT RYGHDKIEAHLPRLVRAVKESGHPVVWSCDPMHGNVIKTSTGYKTRPFERILAEVRGFFAVHRAEGTHGGGIHIEMTGQN VTECTGGAMDVTQMDLADRYHTHCDPRLNAGQSLELAFLLAEMLNQEMSERAKQAA
Specific function: Unknown
COG id: COG3200
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II DAHP synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002480 [H]
Pfam domain/function: PF01474 DAHP_synth_2 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 50764; Mature: 50633
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKNWQPHSWRTHEARQLPTYRDADALAAAERELANYPPLVFAGEARELTNELARVAEGR CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCC AFLLQGGDCAESFAEFHPNNIRDTFRVLLQMAVVLTFASKMPVVKLGRMAGQFAKPRSAD EEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC MEEVDGVALPSYRGDIINDIAFEEAGREPDPARMVKAYNQSAATLNLLRAFAGGGYANLH HHHHCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH QVNAWTHDFMDRSPWAKKYQETAGRISEALAFMEACGVTPETVPQIKGTSFYTSHEALLL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEECCCEEEE PYEQALTRQDSLTGGWYDTSGHFLWVGDRTRFEGSAHIEYLRGIGNPVGMKCGPSLEPDV EHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH LLRLLDTLNPNHVPGRMTLITRYGHDKIEAHLPRLVRAVKESGHPVVWSCDPMHGNVIKT HHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEE STGYKTRPFERILAEVRGFFAVHRAEGTHGGGIHIEMTGQNVTECTGGAMDVTQMDLADR CCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHH YHTHCDPRLNAGQSLELAFLLAEMLNQEMSERAKQAA HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TKNWQPHSWRTHEARQLPTYRDADALAAAERELANYPPLVFAGEARELTNELARVAEGR CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCC AFLLQGGDCAESFAEFHPNNIRDTFRVLLQMAVVLTFASKMPVVKLGRMAGQFAKPRSAD EEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC MEEVDGVALPSYRGDIINDIAFEEAGREPDPARMVKAYNQSAATLNLLRAFAGGGYANLH HHHHCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH QVNAWTHDFMDRSPWAKKYQETAGRISEALAFMEACGVTPETVPQIKGTSFYTSHEALLL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEECCCEEEE PYEQALTRQDSLTGGWYDTSGHFLWVGDRTRFEGSAHIEYLRGIGNPVGMKCGPSLEPDV EHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH LLRLLDTLNPNHVPGRMTLITRYGHDKIEAHLPRLVRAVKESGHPVVWSCDPMHGNVIKT HHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEE STGYKTRPFERILAEVRGFFAVHRAEGTHGGGIHIEMTGQNVTECTGGAMDVTQMDLADR CCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHH YHTHCDPRLNAGQSLELAFLLAEMLNQEMSERAKQAA HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953; 8760910 [H]