| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is qmcA [H]
Identifier: 103487696
GI number: 103487696
Start: 2326796
End: 2327710
Strand: Direct
Name: qmcA [H]
Synonym: Sala_2215
Alternate gene names: 103487696
Gene position: 2326796-2327710 (Clockwise)
Preceding gene: 103487693
Following gene: 103487697
Centisome position: 69.56
GC content: 62.51
Gene sequence:
>915_bases ATGGAATTCGCACTCGCACTGGTGGTTCTGGCGCTGGTGTTCCTGATCTGGGCGTTAACGCCCGTGCGCCAGGGTTTTGC CTATACGATCGAGCGCTTCGGCCGTTACACGCACACGGCGCAGCCGGGGCTCAATTTCATCATGCCGATCTTCGACCGGG TGGGTCGGAAAGTGAACATGATGGAGCAGGTGCTCGACATTCCGGGGCAGGAAATCATCACCAAGGACAATGCGATGGTC GCGGTCGACGGTGTCGTGTTCTTTCAGGTGCTCGACGCCGCGAAGGCCGCCTATGAGGTCAGCGACCTGTATCTTTCGAT CATGAACCTGACGACGACCAACCTGCGCACCGTGATGGGGTCGATGGACCTCGACGAAACGCTGTCGAAGCGCGACGAAA TCAACGCGCGGCTGCTCCACGTCGTCGACGATGCGACAACGCCGTGGGGGGTCAAGATCACCCGCGTCGAGATCAAGGAC ATCCGCCCGCCCGCCGACATTTCGAACGCCATGGCGCGCCAGATGAAGGCCGAGCGCGAAAAACGCGCCGCGATCCTGGA GGCCGAGGGACTGCGCGCCTCCGAAATCCTCCGCGCCGAGGGCGAAAAGCAGGGCCAGATTTTGCAGGCCGAAGGCCGCC GCGAGGCCGCCTTCCGCGATGCCGAGGCGCGCGAACGCGAGGCCGAAGCCGAAGCAAAGGCGACGCAGATGGTCAGCGAC GCGATCGCCAGTGGCAATGCGCAGGCGATCAACTATTTCATCGCGCAAAAATATGTCGAGGCGGTCAGCCAGTTCGCAAC CAGCCCGAACAGCAAGACGATCCTCTTCCCGGTCGAGGCGACGCAGTTGATCGGGACTTTGGGCGGCATCGGCGAACTCG CCAAGGATGCGTTCGAACGCAAGGGAGGCGCCTGA
Upstream 100 bases:
>100_bases GGCGAAGTCGGTCATGCGCTTTTCTGTGGCGCAGCCGCGCCATTGCCGCAATAAGGAAGGCGGGTTTGCAAAGACGCTTG TTTGCAAGAGGGGATGATCG
Downstream 100 bases:
>100_bases CATGCCCGACTGGCTGACCAATATGGAGCCGCATTGGGCGTGGCTGTCGCTCGGCGTGCTGCTTGCCGCCGCCGAAATCG TTGCGCCGGGCTTCTTCCTC
Product: band 7 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MEFALALVVLALVFLIWALTPVRQGFAYTIERFGRYTHTAQPGLNFIMPIFDRVGRKVNMMEQVLDIPGQEIITKDNAMV AVDGVVFFQVLDAAKAAYEVSDLYLSIMNLTTTNLRTVMGSMDLDETLSKRDEINARLLHVVDDATTPWGVKITRVEIKD IRPPADISNAMARQMKAEREKRAAILEAEGLRASEILRAEGEKQGQILQAEGRREAAFRDAEAREREAEAEAKATQMVSD AIASGNAQAINYFIAQKYVEAVSQFATSPNSKTILFPVEATQLIGTLGGIGELAKDAFERKGGA
Sequences:
>Translated_304_residues MEFALALVVLALVFLIWALTPVRQGFAYTIERFGRYTHTAQPGLNFIMPIFDRVGRKVNMMEQVLDIPGQEIITKDNAMV AVDGVVFFQVLDAAKAAYEVSDLYLSIMNLTTTNLRTVMGSMDLDETLSKRDEINARLLHVVDDATTPWGVKITRVEIKD IRPPADISNAMARQMKAEREKRAAILEAEGLRASEILRAEGEKQGQILQAEGRREAAFRDAEAREREAEAEAKATQMVSD AIASGNAQAINYFIAQKYVEAVSQFATSPNSKTILFPVEATQLIGTLGGIGELAKDAFERKGGA >Mature_304_residues MEFALALVVLALVFLIWALTPVRQGFAYTIERFGRYTHTAQPGLNFIMPIFDRVGRKVNMMEQVLDIPGQEIITKDNAMV AVDGVVFFQVLDAAKAAYEVSDLYLSIMNLTTTNLRTVMGSMDLDETLSKRDEINARLLHVVDDATTPWGVKITRVEIKD IRPPADISNAMARQMKAEREKRAAILEAEGLRASEILRAEGEKQGQILQAEGRREAAFRDAEAREREAEAEAKATQMVSD AIASGNAQAINYFIAQKYVEAVSQFATSPNSKTILFPVEATQLIGTLGGIGELAKDAFERKGGA
Specific function: Unknown
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family [H]
Homologues:
Organism=Homo sapiens, GI7305503, Length=261, Percent_Identity=35.2490421455939, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI21686995, Length=202, Percent_Identity=35.1485148514851, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI221316744, Length=202, Percent_Identity=35.1485148514851, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI38016911, Length=200, Percent_Identity=37.5, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=27.2727272727273, Blast_Score=92, Evalue=8e-19, Organism=Escherichia coli, GI1786697, Length=299, Percent_Identity=61.5384615384615, Blast_Score=402, Evalue=1e-113, Organism=Caenorhabditis elegans, GI32564147, Length=264, Percent_Identity=37.1212121212121, Blast_Score=174, Evalue=4e-44, Organism=Caenorhabditis elegans, GI17569493, Length=192, Percent_Identity=33.8541666666667, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI193209764, Length=191, Percent_Identity=34.0314136125654, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17569499, Length=163, Percent_Identity=39.8773006134969, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI25153583, Length=162, Percent_Identity=41.358024691358, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71987612, Length=162, Percent_Identity=41.358024691358, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71987621, Length=162, Percent_Identity=41.358024691358, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17569497, Length=149, Percent_Identity=33.5570469798658, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71989948, Length=159, Percent_Identity=37.1069182389937, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI71989955, Length=144, Percent_Identity=39.5833333333333, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17570459, Length=202, Percent_Identity=35.1485148514851, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI32566490, Length=158, Percent_Identity=37.3417721518987, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193210507, Length=192, Percent_Identity=34.8958333333333, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17570161, Length=192, Percent_Identity=34.8958333333333, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71989963, Length=107, Percent_Identity=36.4485981308411, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17542664, Length=171, Percent_Identity=28.6549707602339, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI45550506, Length=261, Percent_Identity=34.0996168582375, Blast_Score=164, Evalue=1e-40, Organism=Drosophila melanogaster, GI62484448, Length=207, Percent_Identity=37.6811594202899, Blast_Score=111, Evalue=7e-25, Organism=Drosophila melanogaster, GI281365664, Length=207, Percent_Identity=37.6811594202899, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24657857, Length=207, Percent_Identity=37.6811594202899, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI62484274, Length=207, Percent_Identity=37.6811594202899, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI18860517, Length=166, Percent_Identity=38.5542168674699, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI45556022, Length=162, Percent_Identity=38.8888888888889, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21356845, Length=194, Percent_Identity=31.4432989690722, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI281361633, Length=195, Percent_Identity=31.2820512820513, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI281361631, Length=195, Percent_Identity=31.2820512820513, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI28573263, Length=196, Percent_Identity=30.6122448979592, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI281361635, Length=140, Percent_Identity=30, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR018080 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7 [H]
EC number: NA
Molecular weight: Translated: 33500; Mature: 33500
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS01270 BAND_7
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFALALVVLALVFLIWALTPVRQGFAYTIERFGRYTHTAQPGLNFIMPIFDRVGRKVNM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH MEQVLDIPGQEIITKDNAMVAVDGVVFFQVLDAAKAAYEVSDLYLSIMNLTTTNLRTVMG HHHHHCCCCHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SMDLDETLSKRDEINARLLHVVDDATTPWGVKITRVEIKDIRPPADISNAMARQMKAERE CCCHHHHHHHHHHCCHHHEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH KRAAILEAEGLRASEILRAEGEKQGQILQAEGRREAAFRDAEAREREAEAEAKATQMVSD HHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH AIASGNAQAINYFIAQKYVEAVSQFATSPNSKTILFPVEATQLIGTLGGIGELAKDAFER HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHH KGGA CCCC >Mature Secondary Structure MEFALALVVLALVFLIWALTPVRQGFAYTIERFGRYTHTAQPGLNFIMPIFDRVGRKVNM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH MEQVLDIPGQEIITKDNAMVAVDGVVFFQVLDAAKAAYEVSDLYLSIMNLTTTNLRTVMG HHHHHCCCCHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SMDLDETLSKRDEINARLLHVVDDATTPWGVKITRVEIKDIRPPADISNAMARQMKAERE CCCHHHHHHHHHHCCHHHEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH KRAAILEAEGLRASEILRAEGEKQGQILQAEGRREAAFRDAEAREREAEAEAKATQMVSD HHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH AIASGNAQAINYFIAQKYVEAVSQFATSPNSKTILFPVEATQLIGTLGGIGELAKDAFER HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHH KGGA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]