| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is engA [H]
Identifier: 103487684
GI number: 103487684
Start: 2314827
End: 2316197
Strand: Reverse
Name: engA [H]
Synonym: Sala_2203
Alternate gene names: 103487684
Gene position: 2316197-2314827 (Counterclockwise)
Preceding gene: 103487685
Following gene: 103487683
Centisome position: 69.24
GC content: 67.25
Gene sequence:
>1371_bases ATGTCGCGACACGCGACGATCGCCATTGTCGGCCGGCCCAATGTCGGCAAATCGACGCTGTTCAACCGGCTCGTCGGCAA GCGGCTTGCGCTGGTCGACGACCAGCCGGGGGTGACGCGCGACCGGCGCGAGGGCGACGGCAAGCTGCTCGGCCTCGAGT TTCGCATCGTCGATACGGCGGGATTCGAGGATCAGGATGCAGCGACCCTGCCCGGTCGGATGCGCGCGCAGACCGAAAAG GCGGTGCGCGAGGCCGACGCCGCGCTGTTCCTGATCGACGCGCGCGCCGGGGTGACGCCGCTCGACGAGGAAATCGCCCG CTGGCTGCGCAGCGAGGATACGCCGGTGATCCTGTGCGCGAACAAGGCGGAAGGCAAGCAGGGCGAGGCAGGGTTGATGG AGGCCTACAGCCTCGGCTTCGAGACGGTATTCGCGCTCAGCGCCGAACATGGCGAGGGTCTGGTCGACCTGTTCGACGCG CTGCGCCCGATCGTCGAGCCCTTCATGGACGCCGAGACAGCGGCGGTCGACGAAGCCGATGAAGAGGCCGCGGGTCCGAT GAAGCTCGCGATCGTCGGTCGTCCCAACGCCGGCAAATCGACGCTGATCAACCGGATGATCGGCGAGGACCGGCTCATCA CCGGGCCCGAGGCGGGGATCACGCGCGATTCGATCCGCGTCGACTGGCGCTGGGAAAAGGATGGCGAGGTCCACGAGATC CAGCTGTTCGACACCGCCGGGATGCGCAAGCGCGCGAAGGTGCAGGACAAGCTGGAGAAGCTATCGGTCGCCGACGCGCT CCACGCGGTCGATTTCGCCGAAGTCGTCGTGCTGCTGCTCGACGCGACCAAGGGGCTGGAAGCGCAGGATCTGCGCATCG CCGACCGGGTGCTGCAGGAAGGGCGCGCGCTGATCGTTGCGCTCAACAAATGGGACATTGCCGAAGATCCCTCGTCGCTG TTCAACGGGGTGCGCGCGGCGCTCGACGACGGGCTCAGCCAGGTGAAGGGCGTGCCCGTGCTCAGCATTTCGGGCGCGAC GGGCAAGGGGATCGACACGCTCGTCCGCGTCGCCTTCGAACAGCGCGCGATCTGGACGAACCGCGTTTCGACCGCGAAGC TCAACCGCTGGTTCGAGGCGGCGGTGACCGCGAATCCGCCGCCGGCGCCGGGGGGCAAGCGGATCAAGCTGCGCTATATC ACGCAGGCGCGCACGCGCCCGCCGACCTTCGTGGTGTTCGGATCGCGCACCGACGCGCTGCCCGGAAGCTATGAACGCTA TCTCGTCAACGGGATGCGCAAGGAGCTGGGGTTCCAGGGCGTTCCGGTGCGGCTCAATTTCCGCAACGCGCGCAATCCCT ATGATGAATGA
Upstream 100 bases:
>100_bases TCGTCGCGAACAACATCCTCTACATCCTCGCGGACGACGGGACGATCACCGCCTGGCGCTAGGACAGACGAATAGGGCTG GCCCTATTGGAGGAAAATGA
Downstream 100 bases:
>100_bases GGTGATGGCGCGGCTGGTCGACGCGCGCGGGATGCGCTGTCCCTGGCCCGCGCTGCGGCTTGCGCGCGCGATGCGTGAGG CGGAGGCGGTGCTGCTGGTC
Product: GTP-binding protein EngA
Products: NA
Alternate protein names: GTP-binding protein EngA [H]
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGFEDQDAATLPGRMRAQTEK AVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEGKQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDA LRPIVEPFMDAETAAVDEADEEAAGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEI QLFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQEGRALIVALNKWDIAEDPSSL FNGVRAALDDGLSQVKGVPVLSISGATGKGIDTLVRVAFEQRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYI TQARTRPPTFVVFGSRTDALPGSYERYLVNGMRKELGFQGVPVRLNFRNARNPYDE
Sequences:
>Translated_456_residues MSRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGFEDQDAATLPGRMRAQTEK AVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEGKQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDA LRPIVEPFMDAETAAVDEADEEAAGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEI QLFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQEGRALIVALNKWDIAEDPSSL FNGVRAALDDGLSQVKGVPVLSISGATGKGIDTLVRVAFEQRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYI TQARTRPPTFVVFGSRTDALPGSYERYLVNGMRKELGFQGVPVRLNFRNARNPYDE >Mature_455_residues SRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGFEDQDAATLPGRMRAQTEKA VREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEGKQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDAL RPIVEPFMDAETAAVDEADEEAAGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEIQ LFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQEGRALIVALNKWDIAEDPSSLF NGVRAALDDGLSQVKGVPVLSISGATGKGIDTLVRVAFEQRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYIT QARTRPPTFVVFGSRTDALPGSYERYLVNGMRKELGFQGVPVRLNFRNARNPYDE
Specific function: GTPase that plays an essential role in the late steps of ribosome biogenesis [H]
COG id: COG1160
COG function: function code R; Predicted GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH-like domain [H]
Homologues:
Organism=Escherichia coli, GI87082120, Length=472, Percent_Identity=40.4661016949153, Blast_Score=325, Evalue=5e-90, Organism=Escherichia coli, GI1788919, Length=150, Percent_Identity=32, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI2367268, Length=173, Percent_Identity=34.1040462427746, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016484 - InterPro: IPR015946 - InterPro: IPR002917 - InterPro: IPR005225 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 49931; Mature: 49800
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTA CCCCEEEEEEECCCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECC GFEDQDAATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCA CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEC NKAEGKQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIVEPFMDAETAAVDEAD CCCCCCCCCCHHHHHHHCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCC EEAAGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEI HHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEE QLFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQE EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GRALIVALNKWDIAEDPSSLFNGVRAALDDGLSQVKGVPVLSISGATGKGIDTLVRVAFE CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH QRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYITQARTRPPTFVVFGSRTDAL HHHHHHCCCCHHHHHHHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCC PGSYERYLVNGMRKELGFQGVPVRLNFRNARNPYDE CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure SRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTA CCCEEEEEEECCCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECC GFEDQDAATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCA CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEC NKAEGKQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIVEPFMDAETAAVDEAD CCCCCCCCCCHHHHHHHCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCC EEAAGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEI HHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEE QLFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQE EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GRALIVALNKWDIAEDPSSLFNGVRAALDDGLSQVKGVPVLSISGATGKGIDTLVRVAFE CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH QRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYITQARTRPPTFVVFGSRTDAL HHHHHHCCCCHHHHHHHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCC PGSYERYLVNGMRKELGFQGVPVRLNFRNARNPYDE CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA