| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487636
Identifier: 103487636
GI number: 103487636
Start: 2265243
End: 2266622
Strand: Reverse
Name: 103487636
Synonym: Sala_2155
Alternate gene names: NA
Gene position: 2266622-2265243 (Counterclockwise)
Preceding gene: 103487637
Following gene: 103487634
Centisome position: 67.76
GC content: 68.33
Gene sequence:
>1380_bases ATGCGGTGGTTGTTTGCACTGGGCGCCGTGTCGGCGATCGCGGCGATGCCGACGATGGCGGTCGGCGCCGATGCCGACCT GACCCGCGCCTGGGCGGCGGGATATCGTGCGGCGTTCACCTGCTCCTCGCTGTGGAACGGTGCCGGAAAGCCGATCGAGG CGATCGAGCGCGACGAGCTGACCGGCATCTACCCCGAAGTCGAAGCCGAGGTTCGTGTGCTGAAGGCCGATGTGGACTTG AAGACACGGCGGGTCAGCGTCCGCTATCGCGATGACATGCCGCCGCGCATCGCTCAATGGACGCGGCGCAACGGTTGCGT CACGCTGCCGACAGGCGCCGAGGCGCCCGTCGGCCTGTCGCCCGACGGACAGCGCGCCGATCTGGATGCGCGCGCCTGGC CGATCGGTGACGCGGACGCGCGCTGGCCGGTGCGCAGGGGAGTGACGGGCTTTGAGCCGGTGGCGATGGACATCGCCGAC TTCGGCGGACGCACCAGTTCTTTGTTGATCGTCAAGACCGGGCGCATCGCTCTGGAGCGCTATTGGGGCGGACACAATCG CCATACGGCGCAGCGCACCTTTTCGGTCGCGAAATCGATGGCGGCGACGTTGATCGGTCACGCCGTTCAGCAGGGGCGGT TCGATGTGACGCAGCCGGCGATGATCGCCGAATGGCAGGCGCCCGGCGACCCGCGCAGCGCCATCACGACCGAACAGCTC ATGCGCATGGCGAGCGGCCTCACCAGCGACAGCGCGGGCAATCGCACCGACGCCGTCTATATGGGCGGCGCGTCGGTGCG CCAGTGGACGGTGCAGTGGCCGCTGCTCCACCCGCCGGGCATGCGCTATCGCTATGCCAACAACGATACGCTGCTCGCGG TGCAGTCGCTGAAGGCGGCGCTCGAAAAGACGGGCGCGCCGCTCGATCCCGCCGCTTTCTTCGACCGGATCGGCATGACG CGCACCTTTGCCGAACGCGACAAGGACGGCGATTTCATCCTGTCCAGTCAGGTGTGGACGACCGCGCGGGACCTCGCGCG GTTCGGGCTGCTCTACCAGAATGATGGCATGTGGCAGGGGGAGCGCCTGCTTCCCGCCGACTGGCGCCGCTTCGTCACCA CGCCGGGCGGGCCGCAACCCGATGGCGCCTTCGGCTATGGCGCCGGCTTCTGGCTGTTCGGCGGGTCTCCCGGCGTACCC GCCGACGCCTTCGGCGCCTTTGGCAACCGCGGCCAATATGTCGTCATCATTCCGTCGCGCGCGCTGGTGATCGTCCGCCA GGGGTATGACGACAGCGCGAACCGGCTGGACATTGCGAAGCTGGTTGCGGCGGTGGTCGCCGCGGACGATGGCGACCGGC GCTATTCAAAGGGCGGGTAA
Upstream 100 bases:
>100_bases GCGGCTTTGAAAAACGGATTGCCGAGCGCATGGCCTGGTGGGACGCGCAACGACGGTCAGGGCGGTGATGATGAATCAGG CGCATAGGAGTGCTCGTTCG
Downstream 100 bases:
>100_bases CGCTCGAACGCGGGCAGGTCGACCAGCCTTTCCATCCAGCCGATGCGCTCGGCTGTCTGGATCTGCGCCTGCACCGGGAT CAGGTCGGGATCGTCGAGCG
Product: beta-lactamase
Products: NA
Alternate protein names: 6-Aminohexanoate-Dimer Hydrolase; Beta-Lactamase Class C; 6-Aminohexanoate-Dimer Hydrolase Protein; Beta-Lactamase Family Protein; Hydrolase Transmembrane Protein; Beta-Lactamase Class C Family Protein; Secreted Beta-Lactamase Family Protein; Hydrolase; Beta-Lactamase Class C Protein; Membrane Or Secreted Beta-Lactamase Family Protein; Exported 6-Aminohexanoate-Dimer Hydrolase Protein; Hydrolatse Transmembrane Protein; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MRWLFALGAVSAIAAMPTMAVGADADLTRAWAAGYRAAFTCSSLWNGAGKPIEAIERDELTGIYPEVEAEVRVLKADVDL KTRRVSVRYRDDMPPRIAQWTRRNGCVTLPTGAEAPVGLSPDGQRADLDARAWPIGDADARWPVRRGVTGFEPVAMDIAD FGGRTSSLLIVKTGRIALERYWGGHNRHTAQRTFSVAKSMAATLIGHAVQQGRFDVTQPAMIAEWQAPGDPRSAITTEQL MRMASGLTSDSAGNRTDAVYMGGASVRQWTVQWPLLHPPGMRYRYANNDTLLAVQSLKAALEKTGAPLDPAAFFDRIGMT RTFAERDKDGDFILSSQVWTTARDLARFGLLYQNDGMWQGERLLPADWRRFVTTPGGPQPDGAFGYGAGFWLFGGSPGVP ADAFGAFGNRGQYVVIIPSRALVIVRQGYDDSANRLDIAKLVAAVVAADDGDRRYSKGG
Sequences:
>Translated_459_residues MRWLFALGAVSAIAAMPTMAVGADADLTRAWAAGYRAAFTCSSLWNGAGKPIEAIERDELTGIYPEVEAEVRVLKADVDL KTRRVSVRYRDDMPPRIAQWTRRNGCVTLPTGAEAPVGLSPDGQRADLDARAWPIGDADARWPVRRGVTGFEPVAMDIAD FGGRTSSLLIVKTGRIALERYWGGHNRHTAQRTFSVAKSMAATLIGHAVQQGRFDVTQPAMIAEWQAPGDPRSAITTEQL MRMASGLTSDSAGNRTDAVYMGGASVRQWTVQWPLLHPPGMRYRYANNDTLLAVQSLKAALEKTGAPLDPAAFFDRIGMT RTFAERDKDGDFILSSQVWTTARDLARFGLLYQNDGMWQGERLLPADWRRFVTTPGGPQPDGAFGYGAGFWLFGGSPGVP ADAFGAFGNRGQYVVIIPSRALVIVRQGYDDSANRLDIAKLVAAVVAADDGDRRYSKGG >Mature_459_residues MRWLFALGAVSAIAAMPTMAVGADADLTRAWAAGYRAAFTCSSLWNGAGKPIEAIERDELTGIYPEVEAEVRVLKADVDL KTRRVSVRYRDDMPPRIAQWTRRNGCVTLPTGAEAPVGLSPDGQRADLDARAWPIGDADARWPVRRGVTGFEPVAMDIAD FGGRTSSLLIVKTGRIALERYWGGHNRHTAQRTFSVAKSMAATLIGHAVQQGRFDVTQPAMIAEWQAPGDPRSAITTEQL MRMASGLTSDSAGNRTDAVYMGGASVRQWTVQWPLLHPPGMRYRYANNDTLLAVQSLKAALEKTGAPLDPAAFFDRIGMT RTFAERDKDGDFILSSQVWTTARDLARFGLLYQNDGMWQGERLLPADWRRFVTTPGGPQPDGAFGYGAGFWLFGGSPGVP ADAFGAFGNRGQYVVIIPSRALVIVRQGYDDSANRLDIAKLVAAVVAADDGDRRYSKGG
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49901; Mature: 49901
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWLFALGAVSAIAAMPTMAVGADADLTRAWAAGYRAAFTCSSLWNGAGKPIEAIERDEL CCHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHCCHHEEEHHHHHCCCCCCHHHHHHCCC TGIYPEVEAEVRVLKADVDLKTRRVSVRYRDDMPPRIAQWTRRNGCVTLPTGAEAPVGLS CCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCC PDGQRADLDARAWPIGDADARWPVRRGVTGFEPVAMDIADFGGRTSSLLIVKTGRIALER CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEEEE YWGGHNRHTAQRTFSVAKSMAATLIGHAVQQGRFDVTQPAMIAEWQAPGDPRSAITTEQL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHH MRMASGLTSDSAGNRTDAVYMGGASVRQWTVQWPLLHPPGMRYRYANNDTLLAVQSLKAA HHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHH LEKTGAPLDPAAFFDRIGMTRTFAERDKDGDFILSSQVWTTARDLARFGLLYQNDGMWQG HHHCCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCEEECCCCCCC ERLLPADWRRFVTTPGGPQPDGAFGYGAGFWLFGGSPGVPADAFGAFGNRGQYVVIIPSR CCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCC ALVIVRQGYDDSANRLDIAKLVAAVVAADDGDRRYSKGG EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MRWLFALGAVSAIAAMPTMAVGADADLTRAWAAGYRAAFTCSSLWNGAGKPIEAIERDEL CCHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHCCHHEEEHHHHHCCCCCCHHHHHHCCC TGIYPEVEAEVRVLKADVDLKTRRVSVRYRDDMPPRIAQWTRRNGCVTLPTGAEAPVGLS CCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCC PDGQRADLDARAWPIGDADARWPVRRGVTGFEPVAMDIADFGGRTSSLLIVKTGRIALER CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEEEE YWGGHNRHTAQRTFSVAKSMAATLIGHAVQQGRFDVTQPAMIAEWQAPGDPRSAITTEQL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHH MRMASGLTSDSAGNRTDAVYMGGASVRQWTVQWPLLHPPGMRYRYANNDTLLAVQSLKAA HHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHH LEKTGAPLDPAAFFDRIGMTRTFAERDKDGDFILSSQVWTTARDLARFGLLYQNDGMWQG HHHCCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCEEECCCCCCC ERLLPADWRRFVTTPGGPQPDGAFGYGAGFWLFGGSPGVPADAFGAFGNRGQYVVIIPSR CCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCC ALVIVRQGYDDSANRLDIAKLVAAVVAADDGDRRYSKGG EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA