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The map label for this gene is rarA [H]

Identifier: 103487637

GI number: 103487637

Start: 2266655

End: 2267974

Strand: Reverse

Name: rarA [H]

Synonym: Sala_2156

Alternate gene names: 103487637

Gene position: 2267974-2266655 (Counterclockwise)

Preceding gene: 103487638

Following gene: 103487636

Centisome position: 67.8

GC content: 67.95

Gene sequence:

>1320_bases
ATGGCGGGCGATCTCTTCGGTGAGGAAACACCGACCGCGCGGCAGGACGCGGCGACCGGCGCCGCGCCGCTCGCTGAGCG
GCTGCGGCCGCGCTCGCTGGCTGAGGTCGTCGGACAGGAGCATCTGACGGGCACCGACGGCGCGATCGGGCGCATGGTCG
CTGCGGGCCAATTGTCGTCGATCATCCTGTGGGGGCCGCCGGGCACGGGCAAGACGACCATCGCGCGCCTTCTGGCCGAG
GCGGTGAAGATGCGTTTCGCCGCGCTGTCGGCAGTTTTTTCGGGCGTCGCCGATTTGCGCCAGGCCTTTGCCGATGCCGA
AAAAATGGCTGCGACGGGCAAACGGACCCTGCTCTTCGTCGACGAGATCCATCGCTTCAACCGCGCGCAACAGGACGGCT
TCCTGCCCTATGTCGAGCGCGGCACCGTCGTGCTCGTCGGCGCGACGACGGAGAACCCCAGCTTTGCCCTGAACGCCGCG
CTGCTCAGCCGCGCGCAGGTGCTGGTGCTGAACCGGCTTGGCGATGCTGCGCTCGAAACGCTGATCGACCGCGCCGAAGC
CGAAACCGGCCGCGCGCTGCCGGTGACGACCGAAGCGCGCGCCGCGCTCGTCGCCAGCGCCGACGGCGACGGGCGGTTCC
TGCTCAATCAGGTCGAAACGCTGTTTTCGGTGACGCTCGATGCGCCGCTCGATCCGGCCGAACTTGCGCAATTTCTCCAC
CGCCGGATGCCCGTCTACGACCGGGATCGCGACGGCCACTATAATCTCATTTCGGCGCTGCATAAGGCGGTGCGCGGCTC
CGACCCGCAGGCGGCGCTCTACTGGCTTGCGCGGATGCTCGTTGCGGGCGAGGAACCGCTTTATGTGCTCCGCCGCCTCA
CCCGCCTTGCGAGCGAGGACATCGGCCTCGCCGACCCGCAGGCGCTGGTGCAGTGCCTCGCCGCAAAGGACGCCTATCAG
TTCCTCGGTTCGCCCGAAGGCGAGCTCGCGATCGTGCAGGCGTGCCTCTATCTCGCCACCGCGCCCAAATCGAACGCCGC
CTATGCCGCGCAGAAGGCGGCGTGGAGCGCGGCACGCGAGACCGGCAGCCTCGCGCCGCCCGCGAACATCCTCAACGCCC
CGACGAAGCTGATGAAGGATCTGGGCTATGGCGCGGGCTACAGCTATGACCATGACGCTCCCGACGGTTTTTCGGGCGAC
AATTATTGGCCTGACGGCATGGCGCCGGGCGACTATTACCGCCCGGTCGATCGCGGCTTTGAAAAACGGATTGCCGAGCG
CATGGCCTGGTGGGACGCGCAACGACGGTCAGGGCGGTGA

Upstream 100 bases:

>100_bases
GAAAGCGGCGCCTATCAGTGGGATGCGATCAATCAGGCGGTTGCCGACACCTATTTGCGCCTGATCCGCCAGAAACAGCG
GCACGGGGGCTGAGCGCCCG

Downstream 100 bases:

>100_bases
TGATGAATCAGGCGCATAGGAGTGCTCGTTCGATGCGGTGGTTGTTTGCACTGGGCGCCGTGTCGGCGATCGCGGCGATG
CCGACGATGGCGGTCGGCGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MAGDLFGEETPTARQDAATGAAPLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQLSSIILWGPPGTGKTTIARLLAE
AVKMRFAALSAVFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA
LLSRAQVLVLNRLGDAALETLIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETLFSVTLDAPLDPAELAQFLH
RRMPVYDRDRDGHYNLISALHKAVRGSDPQAALYWLARMLVAGEEPLYVLRRLTRLASEDIGLADPQALVQCLAAKDAYQ
FLGSPEGELAIVQACLYLATAPKSNAAYAAQKAAWSAARETGSLAPPANILNAPTKLMKDLGYGAGYSYDHDAPDGFSGD
NYWPDGMAPGDYYRPVDRGFEKRIAERMAWWDAQRRSGR

Sequences:

>Translated_439_residues
MAGDLFGEETPTARQDAATGAAPLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQLSSIILWGPPGTGKTTIARLLAE
AVKMRFAALSAVFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA
LLSRAQVLVLNRLGDAALETLIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETLFSVTLDAPLDPAELAQFLH
RRMPVYDRDRDGHYNLISALHKAVRGSDPQAALYWLARMLVAGEEPLYVLRRLTRLASEDIGLADPQALVQCLAAKDAYQ
FLGSPEGELAIVQACLYLATAPKSNAAYAAQKAAWSAARETGSLAPPANILNAPTKLMKDLGYGAGYSYDHDAPDGFSGD
NYWPDGMAPGDYYRPVDRGFEKRIAERMAWWDAQRRSGR
>Mature_438_residues
AGDLFGEETPTARQDAATGAAPLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQLSSIILWGPPGTGKTTIARLLAEA
VKMRFAALSAVFSGVADLRQAFADAEKMAATGKRTLLFVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAAL
LSRAQVLVLNRLGDAALETLIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETLFSVTLDAPLDPAELAQFLHR
RMPVYDRDRDGHYNLISALHKAVRGSDPQAALYWLARMLVAGEEPLYVLRRLTRLASEDIGLADPQALVQCLAAKDAYQF
LGSPEGELAIVQACLYLATAPKSNAAYAAQKAAWSAARETGSLAPPANILNAPTKLMKDLGYGAGYSYDHDAPDGFSGDN
YWPDGMAPGDYYRPVDRGFEKRIAERMAWWDAQRRSGR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=413, Percent_Identity=43.0992736077482, Blast_Score=312, Evalue=5e-85,
Organism=Homo sapiens, GI18426904, Length=413, Percent_Identity=38.7409200968523, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI31563534, Length=216, Percent_Identity=30.5555555555556, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=46.0992907801418, Blast_Score=369, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=41.0501193317422, Blast_Score=293, Evalue=4e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=227, Percent_Identity=28.1938325991189, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47301; Mature: 47170

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGDLFGEETPTARQDAATGAAPLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQLSS
CCCCCCCCCCCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCE
IILWGPPGTGKTTIARLLAEAVKMRFAALSAVFSGVADLRQAFADAEKMAATGKRTLLFV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
DEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAALLSRAQVLVLNRLGDAALET
HHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETLFSVTLDAPLDPAELAQFLH
HHHHHHHCCCCCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RRMPVYDRDRDGHYNLISALHKAVRGSDPQAALYWLARMLVAGEEPLYVLRRLTRLASED
HCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
IGLADPQALVQCLAAKDAYQFLGSPEGELAIVQACLYLATAPKSNAAYAAQKAAWSAARE
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TGSLAPPANILNAPTKLMKDLGYGAGYSYDHDAPDGFSGDNYWPDGMAPGDYYRPVDRGF
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
EKRIAERMAWWDAQRRSGR
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGDLFGEETPTARQDAATGAAPLAERLRPRSLAEVVGQEHLTGTDGAIGRMVAAGQLSS
CCCCCCCCCCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCE
IILWGPPGTGKTTIARLLAEAVKMRFAALSAVFSGVADLRQAFADAEKMAATGKRTLLFV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHH
DEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAALLSRAQVLVLNRLGDAALET
HHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETLFSVTLDAPLDPAELAQFLH
HHHHHHHCCCCCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RRMPVYDRDRDGHYNLISALHKAVRGSDPQAALYWLARMLVAGEEPLYVLRRLTRLASED
HCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
IGLADPQALVQCLAAKDAYQFLGSPEGELAIVQACLYLATAPKSNAAYAAQKAAWSAARE
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TGSLAPPANILNAPTKLMKDLGYGAGYSYDHDAPDGFSGDNYWPDGMAPGDYYRPVDRGF
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
EKRIAERMAWWDAQRRSGR
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]