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The map label for this gene is secB

Identifier: 103487498

GI number: 103487498

Start: 2125806

End: 2126324

Strand: Reverse

Name: secB

Synonym: Sala_2015

Alternate gene names: 103487498

Gene position: 2126324-2125806 (Counterclockwise)

Preceding gene: 103487502

Following gene: 103487497

Centisome position: 63.56

GC content: 63.2

Gene sequence:

>519_bases
ATGGCCGACGAGACAAGCGCCGACATCAACAACCCCGCCCTGCAGCCCAACGGCGAAGACACCAGCCCGGCAATTGGCCT
CATCTCGCAATATGTGAAGGATTTGTCGTTCGAGAATCCGAACGCCCCGGCCGTCTATCAGTGGCAGGGCGCGCCGCAGG
TCGATGTCCAGTTCAACATCGCCGCCGACAGCGTTGGTGACAATCTGTACGAGGTGCTGCTGAAGATCGACGTGACGTCG
AAGACCGACAAGGGCACGAGCTTTGTGATCGAGTTGAAATATGCCGGCCTGTTCGGCGTGCGCAACGTGCCCGACGACCA
GCTCCAGCCCTTTTTCCTGGCCGAAGCACCGCGCATCCTGTTCCCCTTTGCCCGCCGCGTCGTCGCCGATGCGGTGCAGG
ATGGCGGTTTTCCCGCGTTGCTGCTCGAACCGATCGATTTCCACGGCCTGTTCATGCAGCAGGTCCAGGCCGCGCAGGGC
GAGCAGGTCGGCGACGGCGCGCCGGTGGGGCAGGCCTAA

Upstream 100 bases:

>100_bases
CCGCCGCCGCTGCTAAGCGCCGCGGCAACCGTCCGCCGCGGTTCCGACACGGCCCGCGGCGCCGACCTGTCGTTCCCTTT
TTCAGCGAAAGCATCCTATC

Downstream 100 bases:

>100_bases
GCCCGGCTTCGGCAACGGACCGACGCGTTGAGCAGCCTTGTCAAAAGCGTCGGGACGATCGGCGGGCTGACGCTGGTCAG
CCGCATCTTCGGCTTTGCGC

Product: protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MADETSADINNPALQPNGEDTSPAIGLISQYVKDLSFENPNAPAVYQWQGAPQVDVQFNIAADSVGDNLYEVLLKIDVTS
KTDKGTSFVIELKYAGLFGVRNVPDDQLQPFFLAEAPRILFPFARRVVADAVQDGGFPALLLEPIDFHGLFMQQVQAAQG
EQVGDGAPVGQA

Sequences:

>Translated_172_residues
MADETSADINNPALQPNGEDTSPAIGLISQYVKDLSFENPNAPAVYQWQGAPQVDVQFNIAADSVGDNLYEVLLKIDVTS
KTDKGTSFVIELKYAGLFGVRNVPDDQLQPFFLAEAPRILFPFARRVVADAVQDGGFPALLLEPIDFHGLFMQQVQAAQG
EQVGDGAPVGQA
>Mature_171_residues
ADETSADINNPALQPNGEDTSPAIGLISQYVKDLSFENPNAPAVYQWQGAPQVDVQFNIAADSVGDNLYEVLLKIDVTSK
TDKGTSFVIELKYAGLFGVRNVPDDQLQPFFLAEAPRILFPFARRVVADAVQDGGFPALLLEPIDFHGLFMQQVQAAQGE
QVGDGAPVGQA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=131, Percent_Identity=38.1679389312977, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_SPHAL (Q1GRJ6)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617059.1
- ProteinModelPortal:   Q1GRJ6
- SMR:   Q1GRJ6
- GeneID:   4079952
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2015
- NMPDR:   fig|317655.9.peg.1946
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   CLSK753608
- BioCyc:   SALA317655:SALA_2015-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18522; Mature: 18391

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADETSADINNPALQPNGEDTSPAIGLISQYVKDLSFENPNAPAVYQWQGAPQVDVQFNI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEE
AADSVGDNLYEVLLKIDVTSKTDKGTSFVIELKYAGLFGVRNVPDDQLQPFFLAEAPRIL
ECCHHCHHHHHEEHHCCCCCCCCCCCEEEEEEEECCEECCCCCCHHHCCCEEECCCCHHH
FPFARRVVADAVQDGGFPALLLEPIDFHGLFMQQVQAAQGEQVGDGAPVGQA
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADETSADINNPALQPNGEDTSPAIGLISQYVKDLSFENPNAPAVYQWQGAPQVDVQFNI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEE
AADSVGDNLYEVLLKIDVTSKTDKGTSFVIELKYAGLFGVRNVPDDQLQPFFLAEAPRIL
ECCHHCHHHHHEEHHCCCCCCCCCCCEEEEEEEECCEECCCCCCHHHCCCEEECCCCHHH
FPFARRVVADAVQDGGFPALLLEPIDFHGLFMQQVQAAQGEQVGDGAPVGQA
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA