| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487488
Identifier: 103487488
GI number: 103487488
Start: 2114432
End: 2114932
Strand: Reverse
Name: 103487488
Synonym: Sala_2005
Alternate gene names: NA
Gene position: 2114932-2114432 (Counterclockwise)
Preceding gene: 103487489
Following gene: 103487487
Centisome position: 63.22
GC content: 69.86
Gene sequence:
>501_bases ATGGGACGGATCGGCAAGGTCGGGGAGGGCCATGGAGGAAATGCGGGCGGCAGGGCGCGTCCCGGCCGCGCACAGATGGA CATTTTTCTGGAGGCGCTCGCCGAATCGTCAAATGTGGCCGCATCGGCGCGCAAGGCCGGAATCGGCGCCGATGCCATGT ATCGCGAACGGCGGCGCAACAGCGGCTTTGCCGCGCGCTGGCAAGCGGCGCTGTGCGAAGGCTTTGCCCGGCTCGAAGCC GAACTGCTGGCCGAGGCGCTGATCGCGCCGACGGGCAATGTGAAGGATGCGACGCTGAAATCGCGGGCCCAGAAATACCG GCTCGGCCTTTCGTTGCTCGCGGCGCATCGCGCGGCGGTGCGCGGGGCCAAGCTGCCCGGCGTCGGCCCCGCCGCGGCAC AAGGGAGCGCCAAGGCGCGACTGACCGCGAAGCTCCATGCGATGCAGGCGCAGGCCGCGGCCGAGACCGATCTGCTCGCC GATCAGGGCGAGCGCGAATGA
Upstream 100 bases:
>100_bases GTCACGCTGATGTGGCACACGAGTCACATCATGAAGAATTGCGAGTCGGGCCGGCGCCTTTCGGGGCGGTCGGCCCGATC TGTTTTCCGGGGAGGCGGCG
Downstream 100 bases:
>100_bases AGCACGCAACCGACTGCGTCGGCGAAACGCGGACGAAACTCGATCGCTGGTTGAAGGCGCTGTCGGACAGGAAATGCGCG CAGCTGCTGACCGACTGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MGRIGKVGEGHGGNAGGRARPGRAQMDIFLEALAESSNVAASARKAGIGADAMYRERRRNSGFAARWQAALCEGFARLEA ELLAEALIAPTGNVKDATLKSRAQKYRLGLSLLAAHRAAVRGAKLPGVGPAAAQGSAKARLTAKLHAMQAQAAAETDLLA DQGERE
Sequences:
>Translated_166_residues MGRIGKVGEGHGGNAGGRARPGRAQMDIFLEALAESSNVAASARKAGIGADAMYRERRRNSGFAARWQAALCEGFARLEA ELLAEALIAPTGNVKDATLKSRAQKYRLGLSLLAAHRAAVRGAKLPGVGPAAAQGSAKARLTAKLHAMQAQAAAETDLLA DQGERE >Mature_165_residues GRIGKVGEGHGGNAGGRARPGRAQMDIFLEALAESSNVAASARKAGIGADAMYRERRRNSGFAARWQAALCEGFARLEAE LLAEALIAPTGNVKDATLKSRAQKYRLGLSLLAAHRAAVRGAKLPGVGPAAAQGSAKARLTAKLHAMQAQAAAETDLLAD QGERE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17229; Mature: 17098
Theoretical pI: Translated: 10.97; Mature: 10.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRIGKVGEGHGGNAGGRARPGRAQMDIFLEALAESSNVAASARKAGIGADAMYRERRRN CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHC SGFAARWQAALCEGFARLEAELLAEALIAPTGNVKDATLKSRAQKYRLGLSLLAAHRAAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGAKLPGVGPAAAQGSAKARLTAKLHAMQAQAAAETDLLADQGERE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GRIGKVGEGHGGNAGGRARPGRAQMDIFLEALAESSNVAASARKAGIGADAMYRERRRN CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHC SGFAARWQAALCEGFARLEAELLAEALIAPTGNVKDATLKSRAQKYRLGLSLLAAHRAAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGAKLPGVGPAAAQGSAKARLTAKLHAMQAQAAAETDLLADQGERE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA