| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487481
Identifier: 103487481
GI number: 103487481
Start: 2107424
End: 2108917
Strand: Reverse
Name: 103487481
Synonym: Sala_1998
Alternate gene names: NA
Gene position: 2108917-2107424 (Counterclockwise)
Preceding gene: 103487482
Following gene: 103487478
Centisome position: 63.04
GC content: 68.34
Gene sequence:
>1494_bases ATGCCGACCCCCTTTTTCGCCGACCTGGTGCGCGAGCTGGCGCAGGAGGGCGGGACCGGGCCGCTGACGCCGACCGGCGC GGTGCCCGGCCATCGCCGGTTCGCGGGCGCCGTGCCGCCCGGCGTTCCGTTTCATTATGCCGTCGCCGGGATCGCCCATC CCGATCAGTGGGAGGTCGGGATCGGGCGGATCGACGGCAGCGGGCGGTTGCTGCGTGACGCGGTGGCGGCTTCATCAGCG GGCGGCGCGACAGTCGATTTCGCGCCGGGGCTGAAAACGATCGCGCTGACCGTTGGCGCCGACTGGTTTGCGGGCCGCGA TACCGAGGCGGCGGCGCTGGCGGACGAGGTGGCGGCGCTGGGCGGCGAAGTGGCGACCCTGACCGGCGTGGTCGCTACCA GACAGCCGATTTCGACATTGCATGGCAGCGTGGAGTCGGGCGAAGCGAGCGACACGGTGACACTTCGCCGCGGCGCGGAC TGGTTCAACATTCCGCTTTCGGCGCTGGCGTTTCGCGATGCCGACGGGCGATATATATTCGGCGCAGCCGTCCCCAATTA TCTGTTCAACGTGGCGATCGCCAATCCCGCTCGCGGCATCCTCGCCGACTTTGCCAACCTCTCCGGCACGCCGAACGGCG CCCAGATCAGCTTCACGCAGGCCGGCATCAACAACTGGTGCATCGGGCAGGTTCCGGGGATCGACGCCTTTGCCCTTTAC CGGGGGCGCAACGGCGCCGCCGATGGCACCGAAATCTGTCGCTGGTCGGGCACCGGCCTTGGCGTCGGCACGTCCCCGGC TGTCCGGCTGCATGTGAAAGCGGGCGGCGAGATACAGCGGCTCGAAACGACCACGGCGCGCGGCGGTGGCGCCTGTTATC AGGCCTTTTACGATCCGTCGGGGGCCAAGGGGTTCTGCGGCTATTCGGCGATCGACGATGGCTTCGACATCTGGAACAGC CTGAACCATCCGATTCGCTTCGGCACGGGCGGCGCCTATCGCTGGGCGATTTCGTCCGCCGGGGGTTTCTATCCGGTCGC CGACAATGCCTATACCATTGGCGGCAGCGTCAACCGGGTCAGCGAAATCTATGCCGTCAACGGCACGATCAACACCAGTG ACGCGCGCGAAAAGACATGGCGCGGGCCGCCGACCGAGGCCGAACTGCGCGCCGCGCGGCGGATCGCGGGCGAACTGGGG TTCTTTCAATGGAACGCCGCGATCGCCGAAAAGGGCGAGGACGGCGCGCGGCTGCACTTCGGCGTGCGCGCGCAGGCGGT ATGGGCGATCATGGCCGACGAAGGCCTGATCGATCCCGTTGTCGAAGGCGGCGATCCGAGCAGCCGCCATGCCTTTCTTT GTTACGACGCGGGGGATGAGCGGGGCGGGGACGAGGCCGTCGCCGACCGCTTCGGGGTCCGCACCGATCAGCTCGCGCTG TTCCTGATCGCGGCGCAGGAAGCGCGGATCGCGGCGCTGGAGGGGGCGGCATGA
Upstream 100 bases:
>100_bases GGTGCGCGATGGGTGCCCGGTCCGGCTTCCCTTTCCCTTTCGGGAGCGGGCCGGGCGCCAACTGTTCCGATTCCCGAAAC GTTGAAAGGATGGCTTTGCC
Downstream 100 bases:
>100_bases TCGACGGATCGGCACTGGCGGCGCGGGCGATCGCCGATGTGGCCCGGCGCGGCCTGGCGAGCGAGTGGGCCGGGCCGGAG CCCGCCGCGCCGCAGACGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSA GGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGAD WFNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNS LNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELG FFQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL FLIAAQEARIAALEGAA
Sequences:
>Translated_497_residues MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSA GGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGAD WFNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNS LNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELG FFQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL FLIAAQEARIAALEGAA >Mature_496_residues PTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVGIGRIDGSGRLLRDAVAASSAG GATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAALGGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADW FNIPLSALAFRDADGRYIFGAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALYR GRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPSGAKGFCGYSAIDDGFDIWNSL NHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRVSEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGF FQWNAAIAEKGEDGARLHFGVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLALF LIAAQEARIAALEGAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51734; Mature: 51603
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVG CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCCEEE IGRIDGSGRLLRDAVAASSAGGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAAL EEEECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH GGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADWFNIPLSALAFRDADGRYIF CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCCEECCCHHHEEEECCCCCEEE GAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY ECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEE RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPS ECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCC GAKGFCGYSAIDDGFDIWNSLNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRV CCCCCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCCCEEEECCCCEEECCCHHCC SEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGFFQWNAAIAEKGEDGARLHF EEEEEECCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEEE GVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL EEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEE FLIAAQEARIAALEGAA EEEEECCCEEEEECCCC >Mature Secondary Structure PTPFFADLVRELAQEGGTGPLTPTGAVPGHRRFAGAVPPGVPFHYAVAGIAHPDQWEVG CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCCEEE IGRIDGSGRLLRDAVAASSAGGATVDFAPGLKTIALTVGADWFAGRDTEAAALADEVAAL EEEECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH GGEVATLTGVVATRQPISTLHGSVESGEASDTVTLRRGADWFNIPLSALAFRDADGRYIF CCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCCEECCCHHHEEEECCCCCEEE GAAVPNYLFNVAIANPARGILADFANLSGTPNGAQISFTQAGINNWCIGQVPGIDAFALY ECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEE RGRNGAADGTEICRWSGTGLGVGTSPAVRLHVKAGGEIQRLETTTARGGGACYQAFYDPS ECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCC GAKGFCGYSAIDDGFDIWNSLNHPIRFGTGGAYRWAISSAGGFYPVADNAYTIGGSVNRV CCCCCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEEEECCCCEEEECCCCEEECCCHHCC SEIYAVNGTINTSDAREKTWRGPPTEAELRAARRIAGELGFFQWNAAIAEKGEDGARLHF EEEEEECCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEEE GVRAQAVWAIMADEGLIDPVVEGGDPSSRHAFLCYDAGDERGGDEAVADRFGVRTDQLAL EEEEEEEEEEEECCCCCCHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEE FLIAAQEARIAALEGAA EEEEECCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA