| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487478
Identifier: 103487478
GI number: 103487478
Start: 2105225
End: 2105632
Strand: Reverse
Name: 103487478
Synonym: Sala_1995
Alternate gene names: NA
Gene position: 2105632-2105225 (Counterclockwise)
Preceding gene: 103487481
Following gene: 103487477
Centisome position: 62.95
GC content: 66.42
Gene sequence:
>408_bases ATGGCCATCGAAAATGGGAGCGCTTTTCTGCTCAAGGTCGGCGACGGCGGCGCGCCGCCGACCTATCGGACCGTCGCTGG GCTGCGCACGACGCAACTGTCGGTGAACGGCGAGGCGGTGAACGTCACCACCAAGGATTCGGGCGGATGGCGCGAGTTGC TGTCGGGCGCGGGGGTACGGTCGGTGTCGGTGAGCGCCGCGGGCATCTTTACCGGGTCCGATGCCGAGCTGCGGCTGCGC GGCCATGCGCTGTCGGGCGTGATCGACGATTATGAGCTGAGCTTCGAGAGCGGCGAGCGGCTGCGCGGGCGCTTTCTGGT CACGCGGCTCGACTATGCCGGCGATTATAATGGCGAGCGCAATTACACGCTGAACCTCGAATCGAGCGGCGCGGTGGTGA GCCTGTGA
Upstream 100 bases:
>100_bases GTCGCGGCGGGCGACTGGACCATCGCAGCCAGAACCAGTGTCGTAATCAGCATCCTGCGACTCCCCATTCCGCATGATTA TTTTTCAAGGAGATTAGACG
Downstream 100 bases:
>100_bases GCGCGTCGGCGAAGATGGGGGCGAACGCGCTGCGCGGCGAGGCGGAACTATGCGTCGCGGGCGAACGGCTGGTGCTGCGC CCGAGCTTTGCGGCGCTGGT
Product: Phage major tail protein, TP901-1
Products: NA
Alternate protein names: Phage Tail Protein -1 Family; Gene Transfer Agent Orf; Phage Protein; Tail Protein
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAIENGSAFLLKVGDGGAPPTYRTVAGLRTTQLSVNGEAVNVTTKDSGGWRELLSGAGVRSVSVSAAGIFTGSDAELRLR GHALSGVIDDYELSFESGERLRGRFLVTRLDYAGDYNGERNYTLNLESSGAVVSL
Sequences:
>Translated_135_residues MAIENGSAFLLKVGDGGAPPTYRTVAGLRTTQLSVNGEAVNVTTKDSGGWRELLSGAGVRSVSVSAAGIFTGSDAELRLR GHALSGVIDDYELSFESGERLRGRFLVTRLDYAGDYNGERNYTLNLESSGAVVSL >Mature_134_residues AIENGSAFLLKVGDGGAPPTYRTVAGLRTTQLSVNGEAVNVTTKDSGGWRELLSGAGVRSVSVSAAGIFTGSDAELRLRG HALSGVIDDYELSFESGERLRGRFLVTRLDYAGDYNGERNYTLNLESSGAVVSL
Specific function: Unknown
COG id: COG5437
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14232; Mature: 14101
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIENGSAFLLKVGDGGAPPTYRTVAGLRTTQLSVNGEAVNVTTKDSGGWRELLSGAGVR CEECCCCEEEEEECCCCCCCCEEEECCEEEEEEEECCCEEEEEECCCCCHHHHHCCCCCE SVSVSAAGIFTGSDAELRLRGHALSGVIDDYELSFESGERLRGRFLVTRLDYAGDYNGER EEEEEEEEEEECCCCEEEEECEEECCEECCEEECCCCCCCCCEEEEEEEEECCCCCCCCC NYTLNLESSGAVVSL CEEEEECCCCCEEEC >Mature Secondary Structure AIENGSAFLLKVGDGGAPPTYRTVAGLRTTQLSVNGEAVNVTTKDSGGWRELLSGAGVR EECCCCEEEEEECCCCCCCCEEEECCEEEEEEEECCCEEEEEECCCCCHHHHHCCCCCE SVSVSAAGIFTGSDAELRLRGHALSGVIDDYELSFESGERLRGRFLVTRLDYAGDYNGER EEEEEEEEEEECCCCEEEEECEEECCEECCEEECCCCCCCCCEEEEEEEEECCCCCCCCC NYTLNLESSGAVVSL CEEEEECCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA