Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487435

Identifier: 103487435

GI number: 103487435

Start: 2056672

End: 2057358

Strand: Reverse

Name: 103487435

Synonym: Sala_1951

Alternate gene names: NA

Gene position: 2057358-2056672 (Counterclockwise)

Preceding gene: 103487436

Following gene: 103487434

Centisome position: 61.5

GC content: 67.1

Gene sequence:

>687_bases
ATGAAAAAACTTCTTGCCGCTTCCGCGCTGGCGATCGCCGCGCTGTCGGTCTCACCCATCCTGTCGGCCCCGGCCATTGC
GCAGGCGAAGGGCGTGGCGGTCGCCGACGTGCGCGTCGCCGCGGCGCGGTCGAACGCCTTCCGCACCGCTTCGCAGCAGA
TCGAGACGACCTACAAGGCGCAGATCGACCAGCAGCAATCGCGCGGCCAGACGCTGCAGGCCGAAATCAACGTGCTGATC
GCGAAGTATAATGAAGAGGCGCGAAAGACGCCGCAGAACCAGGCCGCGCTGCAGGCGGCGGCCAAGGCCGTGCAGGACAA
GCGTCAGGCCGCGCAGGCCGAACTCGGCCAGATCAGCGCGCCCGTCGACCTTGCCATCGCCTATGTCGAGGATCAGATCA
GCGTCCGCATGAACGAGGCGATCAAGGCGGCGATGACCGCGAAGAAGGTCGACCTGCTGCTCAATCCCGACGCGGTGCTC
GCGCGCGAAAATAATGTCGACATCACCGAGGCGGTCGTGACCGAACTCAACCGCATTCTGCCCAATGTGTCCATCGCGGT
TCCCGCGGGCTATCAGCCGGGCCAGCTCGTCCAGCAGCGCAACCAGCAGCTGATGGACGCCGCGCGCGCGGCGCAGCCCG
GTGCGGCGGCTCCGGCGCCGACCGGCAACCAGCCGACGACGCGCTAA

Upstream 100 bases:

>100_bases
CCCCCTTCGGTCCCTTCCGGATCGACTTCGCTTACGCCCTTCGCAAAGAAGAGGGCGATGATACCAAACGCTTCTCATTC
AATGTAGGAACTCAATTCTG

Downstream 100 bases:

>100_bases
GCGCGATGGCGGCCGGGGAAGACAGCGTGGGCGAGGCCATGGGCGCGGCGGACATCCGCCGGGTTTTGAGCCTGCTCCCG
CATCGTTATCCGATGCTGCT

Product: outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: Outer Membrane Protein OmpH

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKKLLAASALAIAALSVSPILSAPAIAQAKGVAVADVRVAAARSNAFRTASQQIETTYKAQIDQQQSRGQTLQAEINVLI
AKYNEEARKTPQNQAALQAAAKAVQDKRQAAQAELGQISAPVDLAIAYVEDQISVRMNEAIKAAMTAKKVDLLLNPDAVL
ARENNVDITEAVVTELNRILPNVSIAVPAGYQPGQLVQQRNQQLMDAARAAQPGAAAPAPTGNQPTTR

Sequences:

>Translated_228_residues
MKKLLAASALAIAALSVSPILSAPAIAQAKGVAVADVRVAAARSNAFRTASQQIETTYKAQIDQQQSRGQTLQAEINVLI
AKYNEEARKTPQNQAALQAAAKAVQDKRQAAQAELGQISAPVDLAIAYVEDQISVRMNEAIKAAMTAKKVDLLLNPDAVL
ARENNVDITEAVVTELNRILPNVSIAVPAGYQPGQLVQQRNQQLMDAARAAQPGAAAPAPTGNQPTTR
>Mature_228_residues
MKKLLAASALAIAALSVSPILSAPAIAQAKGVAVADVRVAAARSNAFRTASQQIETTYKAQIDQQQSRGQTLQAEINVLI
AKYNEEARKTPQNQAALQAAAKAVQDKRQAAQAELGQISAPVDLAIAYVEDQISVRMNEAIKAAMTAKKVDLLLNPDAVL
ARENNVDITEAVVTELNRILPNVSIAVPAGYQPGQLVQQRNQQLMDAARAAQPGAAAPAPTGNQPTTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24034; Mature: 24034

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLAASALAIAALSVSPILSAPAIAQAKGVAVADVRVAAARSNAFRTASQQIETTYKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QIDQQQSRGQTLQAEINVLIAKYNEEARKTPQNQAALQAAAKAVQDKRQAAQAELGQISA
HHHHHHHCCCEEEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVDLAIAYVEDQISVRMNEAIKAAMTAKKVDLLLNPDAVLARENNVDITEAVVTELNRIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHHHHHHHHHHHHC
PNVSIAVPAGYQPGQLVQQRNQQLMDAARAAQPGAAAPAPTGNQPTTR
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKLLAASALAIAALSVSPILSAPAIAQAKGVAVADVRVAAARSNAFRTASQQIETTYKA
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QIDQQQSRGQTLQAEINVLIAKYNEEARKTPQNQAALQAAAKAVQDKRQAAQAELGQISA
HHHHHHHCCCEEEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVDLAIAYVEDQISVRMNEAIKAAMTAKKVDLLLNPDAVLARENNVDITEAVVTELNRIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHHHHHHHHHHHHC
PNVSIAVPAGYQPGQLVQQRNQQLMDAARAAQPGAAAPAPTGNQPTTR
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA