| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487406
Identifier: 103487406
GI number: 103487406
Start: 2026032
End: 2027099
Strand: Reverse
Name: 103487406
Synonym: Sala_1922
Alternate gene names: NA
Gene position: 2027099-2026032 (Counterclockwise)
Preceding gene: 103487407
Following gene: 103487405
Centisome position: 60.6
GC content: 68.35
Gene sequence:
>1068_bases GTGAATGCGCTCGCCGACCCGGCGATGAAGGCGTTCGCTGGCACACCGCTGTCCGACGCGGCCGAATGGGACGCCTATGT CGCGGCCCATCCGCAGGCGACACCGTTCCACAGCCGAGCGTGGTGTGAGGCGATCACCAGGGCGACCGGGCATCGATGCC ATCTGGTGACCGCGCGCGATGCGCGCGGCGGCCTGACCGGGCTGCTGCCGCTGCACCACATCCGCTCGCCACTGTTCGGG CAGGCGCTCGTCGGTAGCGGCTTTGCCGTCGGCGGCGGCATCTTGGCCGACGATCGCGCCGTGGCCGCGACGCTGGCAAG CGGCGCGGCGGAGATGGCGCGGGCACTCGGCGTGCCGTCGGTCGAACTACGCGGCGGCCCGCTGCCCGAAGGCGAGGGCT GGATGCGCGACGAGGGCGTCTATGCGGGCTTTGCGCGCGACCTCGCCGGTGATGACGACGCCGAACTGCTCGCCATCCCG CGCAAGCAGCGCGCCGAGGTGCGCAAGGCGCGGGCGAGCGCGCTGACCGTTACCATCGGGCGTGACGATGCTGAACGGGA CGATCATTATCGCGTTTACGCCACCAGCGTCCGCAATCTTGGCACGCCCGTTTTTCCCAAGAGCCTGTTCGATGCGGTGC TCGACGCCTTTGGCGAGGGTGCCGACATATTGACCGTGCGCGACGGCGGACGGCCGATAGCCAGTGTGCTCAGTCTTTAT TGGCGCGGCGTGGTGATGCCCTATTGGGGCGGTGGGCTCGCCGACGCGCGGCGCCTCCGTGCCAATGAGTTGATGTATTT CGCTTTGATGAGTCACGCTCGGGCGAGGCAGTGCATCGCTTTCGATTTCGGGCGGTCGAAGGTCGGCACCGGTCCCTGTT ACTACAAGAAGAATTGGGGTTTCGAGCCGCAGCCGCTCGCCTATGCGCGCTGGCTCGCGCCGGGGCGGCGCGCGCGCGAT ACCAATCCGAACAGCGCGAAATACCGGATGCAGGTCGATCTGTGGAAGCGGCTGCCGCTGTGGGCGGCGAACCGCATCGG CCCGCTGATCGCGCGCGGATTGGGGTGA
Upstream 100 bases:
>100_bases CGGGCAAGCTGAAGAAACTGCTCGCCGATTTCGACTGGACGCGCGCCGACGCGCTGCTGCCCGCGCAGCAGCAGCGCGCT GCGCCTTGGCAGGCCGCGGC
Downstream 100 bases:
>100_bases ACGGGCGTGGCCAATATCCCCTCGTCATTGCGAGCCGCAGGCGAAGCAATCTCCAGAAGGCGGCCTTGTGCGCGGTCGAT GGCTGGAGATTGCCGCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MNALADPAMKAFAGTPLSDAAEWDAYVAAHPQATPFHSRAWCEAITRATGHRCHLVTARDARGGLTGLLPLHHIRSPLFG QALVGSGFAVGGGILADDRAVAATLASGAAEMARALGVPSVELRGGPLPEGEGWMRDEGVYAGFARDLAGDDDAELLAIP RKQRAEVRKARASALTVTIGRDDAERDDHYRVYATSVRNLGTPVFPKSLFDAVLDAFGEGADILTVRDGGRPIASVLSLY WRGVVMPYWGGGLADARRLRANELMYFALMSHARARQCIAFDFGRSKVGTGPCYYKKNWGFEPQPLAYARWLAPGRRARD TNPNSAKYRMQVDLWKRLPLWAANRIGPLIARGLG
Sequences:
>Translated_355_residues MNALADPAMKAFAGTPLSDAAEWDAYVAAHPQATPFHSRAWCEAITRATGHRCHLVTARDARGGLTGLLPLHHIRSPLFG QALVGSGFAVGGGILADDRAVAATLASGAAEMARALGVPSVELRGGPLPEGEGWMRDEGVYAGFARDLAGDDDAELLAIP RKQRAEVRKARASALTVTIGRDDAERDDHYRVYATSVRNLGTPVFPKSLFDAVLDAFGEGADILTVRDGGRPIASVLSLY WRGVVMPYWGGGLADARRLRANELMYFALMSHARARQCIAFDFGRSKVGTGPCYYKKNWGFEPQPLAYARWLAPGRRARD TNPNSAKYRMQVDLWKRLPLWAANRIGPLIARGLG >Mature_355_residues MNALADPAMKAFAGTPLSDAAEWDAYVAAHPQATPFHSRAWCEAITRATGHRCHLVTARDARGGLTGLLPLHHIRSPLFG QALVGSGFAVGGGILADDRAVAATLASGAAEMARALGVPSVELRGGPLPEGEGWMRDEGVYAGFARDLAGDDDAELLAIP RKQRAEVRKARASALTVTIGRDDAERDDHYRVYATSVRNLGTPVFPKSLFDAVLDAFGEGADILTVRDGGRPIASVLSLY WRGVVMPYWGGGLADARRLRANELMYFALMSHARARQCIAFDFGRSKVGTGPCYYKKNWGFEPQPLAYARWLAPGRRARD TNPNSAKYRMQVDLWKRLPLWAANRIGPLIARGLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38452; Mature: 38452
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALADPAMKAFAGTPLSDAAEWDAYVAAHPQATPFHSRAWCEAITRATGHRCHLVTARD CCCCHHHHHHHHCCCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECC ARGGLTGLLPLHHIRSPLFGQALVGSGFAVGGGILADDRAVAATLASGAAEMARALGVPS CCCCCCHHHHHHHHCCCHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHCCCC VELRGGPLPEGEGWMRDEGVYAGFARDLAGDDDAELLAIPRKQRAEVRKARASALTVTIG EEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCEEEEEEC RDDAERDDHYRVYATSVRNLGTPVFPKSLFDAVLDAFGEGADILTVRDGGRPIASVLSLY CCCCCCCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH WRGVVMPYWGGGLADARRLRANELMYFALMSHARARQCIAFDFGRSKVGTGPCYYKKNWG HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEECCCCC FEPQPLAYARWLAPGRRARDTNPNSAKYRMQVDLWKRLPLWAANRIGPLIARGLG CCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MNALADPAMKAFAGTPLSDAAEWDAYVAAHPQATPFHSRAWCEAITRATGHRCHLVTARD CCCCHHHHHHHHCCCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECC ARGGLTGLLPLHHIRSPLFGQALVGSGFAVGGGILADDRAVAATLASGAAEMARALGVPS CCCCCCHHHHHHHHCCCHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHCCCC VELRGGPLPEGEGWMRDEGVYAGFARDLAGDDDAELLAIPRKQRAEVRKARASALTVTIG EEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCEEEEEEC RDDAERDDHYRVYATSVRNLGTPVFPKSLFDAVLDAFGEGADILTVRDGGRPIASVLSLY CCCCCCCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH WRGVVMPYWGGGLADARRLRANELMYFALMSHARARQCIAFDFGRSKVGTGPCYYKKNWG HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEECCCCC FEPQPLAYARWLAPGRRARDTNPNSAKYRMQVDLWKRLPLWAANRIGPLIARGLG CCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA