| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487402
Identifier: 103487402
GI number: 103487402
Start: 2019746
End: 2020930
Strand: Reverse
Name: 103487402
Synonym: Sala_1918
Alternate gene names: NA
Gene position: 2020930-2019746 (Counterclockwise)
Preceding gene: 103487403
Following gene: 103487401
Centisome position: 60.41
GC content: 70.04
Gene sequence:
>1185_bases ATGACGGTCCATCCTGCCTTTCCGGTCAGCAGCATCGACGCCGCGCCGCTGACGGTGCGCGTGGTCGATCCGCTGGCGCT GTCGGAGGGGCTGGCGGCGGCGTGGGACGGGCTGGCGGGCGAGGCAAGCGAGCCCAATCCCTTTGCCGAACGCTGGTGCC TGCAATCGGCACTGCACCTGCTCGATCCCGAACGCCAAGCGCGGCTTATCGTCGTGCAGGGCGGCGCGGACGGGCCGCTG ATCGGCGTGATGCCGCTCGCACCCGCGGCGCGTTACAGCCGCCTGCCGCTGCGTCACGCCGTGGGCTGGGCGCACCCCAA TCATTTTCACGGCGCGCCTCTGGTGCGCGCAGGTTTTGAAAGCCTGTTCTGGTCGATCCTGCTCGGCTGGTGCGATGCGG CGCCCTGGGCGCGCACCTTGCTGCATGTGCCGCGATTGACCGAGGACGGGCCGCTCCACCGCGCGCTGATCGATGCGGCG CGGGGGCGTGGTGGCGAGGCCGTGGTCGTCCACCGCGAGGAGCGTGCGCTGCTCGCAAGCGACCTCTCGCCCGCCGCCTA TTGGGACGCAGCGGTGCGCGCGAAGAAGCGCAAGGAATTGAGGCGGCAGGCGAACCGGCTCGCCGATGAGGGTGTGGTGC AATTTCGCCGGTGGCAGGCGGGCGATCCGCCGGGTCCGTGGATCGACGCCTTCCTCGCCCTGGAGGCGCGCGGCTGGAAG GGGCGCGCGGGATCGGCGCTTGCGAGTAACAGCGACACCCAGGCCTGGTTCCGCGCCATCGTGCCCGCCGCCGCCGCGGC GGGGCGGCTCGACATGCGCGCGCTCGACCTCGATGGCCGCCCGCTGGCAATGCTCGTCAACTTCCTGTGCCCGCCCGGCG GCTTTTCGTTCAAGACCGCGTTCGATGAGGATTATGCACGCTTTTCGCCGGGCGTCCTGTTGCAACAGGCGAATCTGGAC CTGCTCGACGACCCGCGCATCGAATGGGTCGACAGCTGCGCCGCGCCCGGCCATCCGATGATCGACAGCGTCTGGCGCGA ACGCCGTGCGCTCGTCTGGGTCAACGTCCCGCTGACAGGGCGCTCCGACCGGCTGCGTTTTGCGATGCTGATGCGCGCCG AGCGAATGTGGCGGCGCTGGAAGGGTGCCGCTCAGCACGCCGATGAAGTGGAAAGCCCGACATGA
Upstream 100 bases:
>100_bases CGCAATTGGTCGAATACCACCATCTCATTCGGCTTCGCGCGGCACGCCCCCCGCTCAAATCGCCACCCCATTTTAACGCT TCGCTGCTAATCTCTCGCCG
Downstream 100 bases:
>100_bases CCGTGCATCAGACGATCAACCGCCCCGTCTTTCCGGCTGAAACGCTGGCAAGCATGGCCACGCTTTATCCGGCGCAGGCG GGGCTGCTCCACCACAACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MTVHPAFPVSSIDAAPLTVRVVDPLALSEGLAAAWDGLAGEASEPNPFAERWCLQSALHLLDPERQARLIVVQGGADGPL IGVMPLAPAARYSRLPLRHAVGWAHPNHFHGAPLVRAGFESLFWSILLGWCDAAPWARTLLHVPRLTEDGPLHRALIDAA RGRGGEAVVVHREERALLASDLSPAAYWDAAVRAKKRKELRRQANRLADEGVVQFRRWQAGDPPGPWIDAFLALEARGWK GRAGSALASNSDTQAWFRAIVPAAAAAGRLDMRALDLDGRPLAMLVNFLCPPGGFSFKTAFDEDYARFSPGVLLQQANLD LLDDPRIEWVDSCAAPGHPMIDSVWRERRALVWVNVPLTGRSDRLRFAMLMRAERMWRRWKGAAQHADEVESPT
Sequences:
>Translated_394_residues MTVHPAFPVSSIDAAPLTVRVVDPLALSEGLAAAWDGLAGEASEPNPFAERWCLQSALHLLDPERQARLIVVQGGADGPL IGVMPLAPAARYSRLPLRHAVGWAHPNHFHGAPLVRAGFESLFWSILLGWCDAAPWARTLLHVPRLTEDGPLHRALIDAA RGRGGEAVVVHREERALLASDLSPAAYWDAAVRAKKRKELRRQANRLADEGVVQFRRWQAGDPPGPWIDAFLALEARGWK GRAGSALASNSDTQAWFRAIVPAAAAAGRLDMRALDLDGRPLAMLVNFLCPPGGFSFKTAFDEDYARFSPGVLLQQANLD LLDDPRIEWVDSCAAPGHPMIDSVWRERRALVWVNVPLTGRSDRLRFAMLMRAERMWRRWKGAAQHADEVESPT >Mature_393_residues TVHPAFPVSSIDAAPLTVRVVDPLALSEGLAAAWDGLAGEASEPNPFAERWCLQSALHLLDPERQARLIVVQGGADGPLI GVMPLAPAARYSRLPLRHAVGWAHPNHFHGAPLVRAGFESLFWSILLGWCDAAPWARTLLHVPRLTEDGPLHRALIDAAR GRGGEAVVVHREERALLASDLSPAAYWDAAVRAKKRKELRRQANRLADEGVVQFRRWQAGDPPGPWIDAFLALEARGWKG RAGSALASNSDTQAWFRAIVPAAAAAGRLDMRALDLDGRPLAMLVNFLCPPGGFSFKTAFDEDYARFSPGVLLQQANLDL LDDPRIEWVDSCAAPGHPMIDSVWRERRALVWVNVPLTGRSDRLRFAMLMRAERMWRRWKGAAQHADEVESPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43371; Mature: 43240
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVHPAFPVSSIDAAPLTVRVVDPLALSEGLAAAWDGLAGEASEPNPFAERWCLQSALHL CCCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LDPERQARLIVVQGGADGPLIGVMPLAPAARYSRLPLRHAVGWAHPNHFHGAPLVRAGFE HCCCCCEEEEEEECCCCCCEEEEECCCCHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHH SLFWSILLGWCDAAPWARTLLHVPRLTEDGPLHRALIDAARGRGGEAVVVHREERALLAS HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHH DLSPAAYWDAAVRAKKRKELRRQANRLADEGVVQFRRWQAGDPPGPWIDAFLALEARGWK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC GRAGSALASNSDTQAWFRAIVPAAAAAGRLDMRALDLDGRPLAMLVNFLCPPGGFSFKTA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCC FDEDYARFSPGVLLQQANLDLLDDPRIEWVDSCAAPGHPMIDSVWRERRALVWVNVPLTG CCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCC RSDRLRFAMLMRAERMWRRWKGAAQHADEVESPT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TVHPAFPVSSIDAAPLTVRVVDPLALSEGLAAAWDGLAGEASEPNPFAERWCLQSALHL CCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LDPERQARLIVVQGGADGPLIGVMPLAPAARYSRLPLRHAVGWAHPNHFHGAPLVRAGFE HCCCCCEEEEEEECCCCCCEEEEECCCCHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHH SLFWSILLGWCDAAPWARTLLHVPRLTEDGPLHRALIDAARGRGGEAVVVHREERALLAS HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHH DLSPAAYWDAAVRAKKRKELRRQANRLADEGVVQFRRWQAGDPPGPWIDAFLALEARGWK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC GRAGSALASNSDTQAWFRAIVPAAAAAGRLDMRALDLDGRPLAMLVNFLCPPGGFSFKTA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCC FDEDYARFSPGVLLQQANLDLLDDPRIEWVDSCAAPGHPMIDSVWRERRALVWVNVPLTG CCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCC RSDRLRFAMLMRAERMWRRWKGAAQHADEVESPT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA