| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is secA
Identifier: 103487301
GI number: 103487301
Start: 1914629
End: 1917364
Strand: Reverse
Name: secA
Synonym: Sala_1817
Alternate gene names: 103487301
Gene position: 1917364-1914629 (Counterclockwise)
Preceding gene: 103487302
Following gene: 103487299
Centisome position: 57.32
GC content: 62.76
Gene sequence:
>2736_bases ATGTTTGCTGGCCTTGCCAAGAGCCTGTTCGGCTCGTCCAACGACCGTTATGTCAATTCGATCCGCAAGATCGTCGAGCG GATCAACGCCTTCGAACCCGCGATGCAGGCGCTCGATGACGCCGGATTGCAGGGGCAGACGGCAACCTTCCGCGCGCGGC TGGCCGCGGGCGAAACGCTCGACGACATTCTGCCCGAAGCCTTTGCCACGGTGCGCGAGGCGGCGGTGCGCACATTGGGG ATGCGTCATTTCGACGTCCAGATGATCGGCGGCGTTGTCCTCCACCGCGGCGAGATCGCCGAAATGGCGACGGGCGAGGG CAAGACGCTGATGGCGACCCTGCCCTGTTATCTGAACGCGCTGAGCGGCAAGGGCGTGCATGTCGTCACCGTCAACGACT ATCTGGCGCGCCGCGACGCCGAATGGATGGGCGCCGTCTATGGCTTCCTGGGGCTGACCACCGGCGTGATCGTCCCGAAC CTCAACGAGACGCAGCGGCGCGAGGCCTATAACAGCGACATCACCTATGCGACGAACAACGAGCTGGGCTTCGACTATCT GCGCGACAATATGAAGTTCGACCGCGCGCAGATGGTCCACCGCCCGTTCAATTTCGGCATCGTCGACGAGGTCGATTCGA TCCTGATCGACGAAGCGCGCACGCCGCTCATCATCTCCGGGCCGACCGACGACAAGTCCGAACTCTATATCCGCGTCAAC GAGGTGGTGCTCCAGCTCACCGAAGAGGATTATGAGAAGGACGAAAAGTCCAAGTCCATCAACCTGACCGAAGAAGGCAC CGAGCATGTCGAGCGGCTGCTCGAAGCCGCGGGGCTGCTCCAGGGCAGCAACCTTTACGACATCGAAAACACCCAGGTCG TCCATCACGTCAATCAGGCGCTGAAAGCGATCCAGATGTTCCGCATCGACACCGACTATATCGTCAAGGACGGCAAGGTC GTCATCATCGACGAGTTCACCGGCCGCATGATGGAGGGGCGCCGCTGGTCCGACGGTCTGCACCAGGCGGTCGAGGCGAA GGAAGGCGTGCAGATCGAGCCCGAGAACCAGACGCTCGCGTCGATCACCTTCCAGAATTATTTCCGCATGTATCCGAAGC TTTCGGGCATGACCGGCACCGCGGCGACCGAGGCGGCCGAGTTTTTCGACATCTACAAGATGAACGTCGTCACCATCCCG ACCAATCGCCCGATCGCGCGGATCGACGAAGAGGACGAGTTTTACAAAAATATCAACGACAAGTTCGGTGCGATCGCGCG CACGATCCGCGAGGCGCAGGAGCGCGGCCAGCCGGTGCTCGTCGGCACGGTGTCGATCGAGAAGTCCGAGCTGCTCTCCT CCTTCCTCGAAAAGGAAGGCGTCGCGCACAGCGTCCTCAACGCACGCTTCCACGAGAGCGAAGCGCGTATCGTCGCGCAG GCGGGACGCAGCGGTGCGGTCACCATCGCGACCAACATGGCGGGCCGCGGCACCGACATCAAACTGGGCGGCAACGAGGA GTTCCGCATCGAGGATGAGCTCAAGGACATGCCCGCCGGGCCCGAGCGCGACGCCGCCGAGGCGCGCATCCGCGAAGAGG TCGCCGCCGAGCGCGAGGCGGTGAAGGCCGCCGGCGGGCTGTTCGTGCTCGCGACCGAGCGCCACGAAAGCCGCCGCATC GACAATCAGCTGCGCGGTCGTTCGGGACGGCAGGGCGACCCCGGCCTCAGCAAATTCTATCTCTGCCTCGACGACGACCT GCTGCGCATCTTTGGTCCCGACACGCTGTTCGCCAAGATGATGAACAAGAATCTGGAGGATGGCGAGGCGATCGGGTCGA AATGGCTGTCGAAGGCGATCGAGACCGCGCAGAAGAAGGTCGAGGCGCGCAATTACGACATCCGCAAGCAGGTCGTCGAA TATGACAATGTGATGAACGACCAGCGCAAGGTCATCTATGAACAGCGCGGCGAGATCATCGACAGCGAGACCGTCGACGA CGTGATGGCGGCGATGCGCGCCGAAACGGTCAATGCGATCGTCGCCGACGCCTGCCCGCCGGGAAGCTATCCCGAGCAAT GGAATGTCGAAGGCATGAAGGAGCGTGTGGCGAACATTCTGAACCTGCATCCGCCTATCGACGAGTGGATGCAGGAGGAT GCCGTCGACCCCGAAATGTTCGAGGAGCGGCTGCAGCGGATGGCCGACGCGACAGCCGCCGAAAAGGCGGCGCTGGTCGA TGCGGAAACCTGGAAGGGCATCGAAAAGTCGATCCTGCTCCAGACGCTCGATCACCATTGGAAGGAGCATCTCGCGACGC TCGACGCGCTTCGGCAGGTGGTGTTCCTGCGCGCCTATGCACAGAAGCAGCCGATCAACGAATATAAGCAGGAGGCGTTC GCGCTGTTCGAGCGGATGCTGTCGAACATCCGCGAGGATGTGACGCGCACCGTCGCGCGCATCGATTTCCAGTTCCAGGA ACCCGAACCGATGCCGCTGCCCGAGCTTCCCGATTTCCTGACGACGCACATCGACCCCTTCACCGGCGAGGACAACAGCG CCGACGTCGATGCGGGGTCGCTGGGGGTGATCGCCGACACGCTGCCCCCGATGCAGGTGCCCAAGCACGACATCGCCAGG GGCGAGAACCCCTATGCGGCGATGGAGATCAGTCGCAACGCGCCGTGCCCGTGCGGGTCGGGGCGCAAATACAAGCATTG CCACGGGGCGATTTGA
Upstream 100 bases:
>100_bases CCCGGACCCCCGGCGTCGCCCCGCAACGGGCATTTCCCTTTTTCGACATGCGCGCGTCCGCGGACGCCGCCCATTCTACT GATTTTCCAAGGATCATTCC
Downstream 100 bases:
>100_bases TCTGATCCTGCCCTCCCCTTCAGGGGAGGGCAGCGAAACTTGGCAGCACGCCGCTCTAGAGCGCGATGACATGATATTGA TCCACCGTGACGGAGGCGAT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 911; Mature: 911
Protein sequence:
>911_residues MFAGLAKSLFGSSNDRYVNSIRKIVERINAFEPAMQALDDAGLQGQTATFRARLAAGETLDDILPEAFATVREAAVRTLG MRHFDVQMIGGVVLHRGEIAEMATGEGKTLMATLPCYLNALSGKGVHVVTVNDYLARRDAEWMGAVYGFLGLTTGVIVPN LNETQRREAYNSDITYATNNELGFDYLRDNMKFDRAQMVHRPFNFGIVDEVDSILIDEARTPLIISGPTDDKSELYIRVN EVVLQLTEEDYEKDEKSKSINLTEEGTEHVERLLEAAGLLQGSNLYDIENTQVVHHVNQALKAIQMFRIDTDYIVKDGKV VIIDEFTGRMMEGRRWSDGLHQAVEAKEGVQIEPENQTLASITFQNYFRMYPKLSGMTGTAATEAAEFFDIYKMNVVTIP TNRPIARIDEEDEFYKNINDKFGAIARTIREAQERGQPVLVGTVSIEKSELLSSFLEKEGVAHSVLNARFHESEARIVAQ AGRSGAVTIATNMAGRGTDIKLGGNEEFRIEDELKDMPAGPERDAAEARIREEVAAEREAVKAAGGLFVLATERHESRRI DNQLRGRSGRQGDPGLSKFYLCLDDDLLRIFGPDTLFAKMMNKNLEDGEAIGSKWLSKAIETAQKKVEARNYDIRKQVVE YDNVMNDQRKVIYEQRGEIIDSETVDDVMAAMRAETVNAIVADACPPGSYPEQWNVEGMKERVANILNLHPPIDEWMQED AVDPEMFEERLQRMADATAAEKAALVDAETWKGIEKSILLQTLDHHWKEHLATLDALRQVVFLRAYAQKQPINEYKQEAF ALFERMLSNIREDVTRTVARIDFQFQEPEPMPLPELPDFLTTHIDPFTGEDNSADVDAGSLGVIADTLPPMQVPKHDIAR GENPYAAMEISRNAPCPCGSGRKYKHCHGAI
Sequences:
>Translated_911_residues MFAGLAKSLFGSSNDRYVNSIRKIVERINAFEPAMQALDDAGLQGQTATFRARLAAGETLDDILPEAFATVREAAVRTLG MRHFDVQMIGGVVLHRGEIAEMATGEGKTLMATLPCYLNALSGKGVHVVTVNDYLARRDAEWMGAVYGFLGLTTGVIVPN LNETQRREAYNSDITYATNNELGFDYLRDNMKFDRAQMVHRPFNFGIVDEVDSILIDEARTPLIISGPTDDKSELYIRVN EVVLQLTEEDYEKDEKSKSINLTEEGTEHVERLLEAAGLLQGSNLYDIENTQVVHHVNQALKAIQMFRIDTDYIVKDGKV VIIDEFTGRMMEGRRWSDGLHQAVEAKEGVQIEPENQTLASITFQNYFRMYPKLSGMTGTAATEAAEFFDIYKMNVVTIP TNRPIARIDEEDEFYKNINDKFGAIARTIREAQERGQPVLVGTVSIEKSELLSSFLEKEGVAHSVLNARFHESEARIVAQ AGRSGAVTIATNMAGRGTDIKLGGNEEFRIEDELKDMPAGPERDAAEARIREEVAAEREAVKAAGGLFVLATERHESRRI DNQLRGRSGRQGDPGLSKFYLCLDDDLLRIFGPDTLFAKMMNKNLEDGEAIGSKWLSKAIETAQKKVEARNYDIRKQVVE YDNVMNDQRKVIYEQRGEIIDSETVDDVMAAMRAETVNAIVADACPPGSYPEQWNVEGMKERVANILNLHPPIDEWMQED AVDPEMFEERLQRMADATAAEKAALVDAETWKGIEKSILLQTLDHHWKEHLATLDALRQVVFLRAYAQKQPINEYKQEAF ALFERMLSNIREDVTRTVARIDFQFQEPEPMPLPELPDFLTTHIDPFTGEDNSADVDAGSLGVIADTLPPMQVPKHDIAR GENPYAAMEISRNAPCPCGSGRKYKHCHGAI >Mature_911_residues MFAGLAKSLFGSSNDRYVNSIRKIVERINAFEPAMQALDDAGLQGQTATFRARLAAGETLDDILPEAFATVREAAVRTLG MRHFDVQMIGGVVLHRGEIAEMATGEGKTLMATLPCYLNALSGKGVHVVTVNDYLARRDAEWMGAVYGFLGLTTGVIVPN LNETQRREAYNSDITYATNNELGFDYLRDNMKFDRAQMVHRPFNFGIVDEVDSILIDEARTPLIISGPTDDKSELYIRVN EVVLQLTEEDYEKDEKSKSINLTEEGTEHVERLLEAAGLLQGSNLYDIENTQVVHHVNQALKAIQMFRIDTDYIVKDGKV VIIDEFTGRMMEGRRWSDGLHQAVEAKEGVQIEPENQTLASITFQNYFRMYPKLSGMTGTAATEAAEFFDIYKMNVVTIP TNRPIARIDEEDEFYKNINDKFGAIARTIREAQERGQPVLVGTVSIEKSELLSSFLEKEGVAHSVLNARFHESEARIVAQ AGRSGAVTIATNMAGRGTDIKLGGNEEFRIEDELKDMPAGPERDAAEARIREEVAAEREAVKAAGGLFVLATERHESRRI DNQLRGRSGRQGDPGLSKFYLCLDDDLLRIFGPDTLFAKMMNKNLEDGEAIGSKWLSKAIETAQKKVEARNYDIRKQVVE YDNVMNDQRKVIYEQRGEIIDSETVDDVMAAMRAETVNAIVADACPPGSYPEQWNVEGMKERVANILNLHPPIDEWMQED AVDPEMFEERLQRMADATAAEKAALVDAETWKGIEKSILLQTLDHHWKEHLATLDALRQVVFLRAYAQKQPINEYKQEAF ALFERMLSNIREDVTRTVARIDFQFQEPEPMPLPELPDFLTTHIDPFTGEDNSADVDAGSLGVIADTLPPMQVPKHDIAR GENPYAAMEISRNAPCPCGSGRKYKHCHGAI
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=936, Percent_Identity=50.9615384615385, Blast_Score=907, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_SPHAL (Q1GS43)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616862.1 - ProteinModelPortal: Q1GS43 - SMR: Q1GS43 - GeneID: 4082208 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1817 - NMPDR: fig|317655.9.peg.1745 - HOGENOM: HBG284200 - OMA: GGMVLHD - ProtClustDB: PRK12904 - BioCyc: SALA317655:SALA_1817-MONOMER - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 102027; Mature: 102027
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAGLAKSLFGSSNDRYVNSIRKIVERINAFEPAMQALDDAGLQGQTATFRARLAAGETL CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH DDILPEAFATVREAAVRTLGMRHFDVQMIGGVVLHRGEIAEMATGEGKTLMATLPCYLNA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEHHHHHHH LSGKGVHVVTVNDYLARRDAEWMGAVYGFLGLTTGVIVPNLNETQRREAYNSDITYATNN CCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEECCC ELGFDYLRDNMKFDRAQMVHRPFNFGIVDEVDSILIDEARTPLIISGPTDDKSELYIRVN CCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHH EVVLQLTEEDYEKDEKSKSINLTEEGTEHVERLLEAAGLLQGSNLYDIENTQVVHHVNQA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH LKAIQMFRIDTDYIVKDGKVVIIDEFTGRMMEGRRWSDGLHQAVEAKEGVQIEPENQTLA HHHHHHHCCCCCEEEECCCEEEEECCCCHHHCCCCHHHHHHHHHHHHCCCEECCCCCCHH SITFQNYFRMYPKLSGMTGTAATEAAEFFDIYKMNVVTIPTNRPIARIDEEDEFYKNIND HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHH KFGAIARTIREAQERGQPVLVGTVSIEKSELLSSFLEKEGVAHSVLNARFHESEARIVAQ HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AGRSGAVTIATNMAGRGTDIKLGGNEEFRIEDELKDMPAGPERDAAEARIREEVAAEREA CCCCCEEEEEECCCCCCCEEEECCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH VKAAGGLFVLATERHESRRIDNQLRGRSGRQGDPGLSKFYLCLDDDLLRIFGPDTLFAKM HHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHH MNKNLEDGEAIGSKWLSKAIETAQKKVEARNYDIRKQVVEYDNVMNDQRKVIYEQRGEII HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCC DSETVDDVMAAMRAETVNAIVADACPPGSYPEQWNVEGMKERVANILNLHPPIDEWMQED CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHC AVDPEMFEERLQRMADATAAEKAALVDAETWKGIEKSILLQTLDHHWKEHLATLDALRQV CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLRAYAQKQPINEYKQEAFALFERMLSNIREDVTRTVARIDFQFQEPEPMPLPELPDFL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCHHH TTHIDPFTGEDNSADVDAGSLGVIADTLPPMQVPKHDIARGENPYAAMEISRNAPCPCGS HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCC GRKYKHCHGAI CCCCCHHCCCC >Mature Secondary Structure MFAGLAKSLFGSSNDRYVNSIRKIVERINAFEPAMQALDDAGLQGQTATFRARLAAGETL CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH DDILPEAFATVREAAVRTLGMRHFDVQMIGGVVLHRGEIAEMATGEGKTLMATLPCYLNA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEHHHHHHH LSGKGVHVVTVNDYLARRDAEWMGAVYGFLGLTTGVIVPNLNETQRREAYNSDITYATNN CCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEECCC ELGFDYLRDNMKFDRAQMVHRPFNFGIVDEVDSILIDEARTPLIISGPTDDKSELYIRVN CCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHH EVVLQLTEEDYEKDEKSKSINLTEEGTEHVERLLEAAGLLQGSNLYDIENTQVVHHVNQA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH LKAIQMFRIDTDYIVKDGKVVIIDEFTGRMMEGRRWSDGLHQAVEAKEGVQIEPENQTLA HHHHHHHCCCCCEEEECCCEEEEECCCCHHHCCCCHHHHHHHHHHHHCCCEECCCCCCHH SITFQNYFRMYPKLSGMTGTAATEAAEFFDIYKMNVVTIPTNRPIARIDEEDEFYKNIND HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHH KFGAIARTIREAQERGQPVLVGTVSIEKSELLSSFLEKEGVAHSVLNARFHESEARIVAQ HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AGRSGAVTIATNMAGRGTDIKLGGNEEFRIEDELKDMPAGPERDAAEARIREEVAAEREA CCCCCEEEEEECCCCCCCEEEECCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH VKAAGGLFVLATERHESRRIDNQLRGRSGRQGDPGLSKFYLCLDDDLLRIFGPDTLFAKM HHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHH MNKNLEDGEAIGSKWLSKAIETAQKKVEARNYDIRKQVVEYDNVMNDQRKVIYEQRGEII HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCC DSETVDDVMAAMRAETVNAIVADACPPGSYPEQWNVEGMKERVANILNLHPPIDEWMQED CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHC AVDPEMFEERLQRMADATAAEKAALVDAETWKGIEKSILLQTLDHHWKEHLATLDALRQV CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLRAYAQKQPINEYKQEAFALFERMLSNIREDVTRTVARIDFQFQEPEPMPLPELPDFL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCHHH TTHIDPFTGEDNSADVDAGSLGVIADTLPPMQVPKHDIARGENPYAAMEISRNAPCPCGS HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCC GRKYKHCHGAI CCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA