| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487299
Identifier: 103487299
GI number: 103487299
Start: 1912682
End: 1914121
Strand: Reverse
Name: 103487299
Synonym: Sala_1815
Alternate gene names: NA
Gene position: 1914121-1912682 (Counterclockwise)
Preceding gene: 103487301
Following gene: 103487298
Centisome position: 57.22
GC content: 64.51
Gene sequence:
>1440_bases ATGTTGCGTGGAAAGGGCTGGGGCATTTCCTTTTTCGACGAGATGACGGGACAGGATGGCGCGGTCCGGGCGCCCTATCG CGACTATGCGGACTGGTTCGGCCGCGAGGACGCGGCGCGCATCCAGCGCAAGGCACAGCAGGCCGAGGCCTTTTTCCGCA CCACGGGCATCACCTTCAACGTCTATGGGCAGGACGAGGCCGACGAGCGGCTGATCCCCTTCGACGTTGTGCCGCGGATC ATTTCAGCGAGCGAATGGCGGCGGTTGTCGCGCGGTATCGAACAGCGCGTGCGCGCCCTCAACGCCTTTCTCCACGACAT CTATCATCGGCAGGAGATTTTGCGCGCGGGGCGCGTGCCGACCGAGCTGATTTCGCGCAACGAGGCCTTCCTGCCGATGA TGATGGGCATGGATCCGCCGGGGGGTGTCTATACGCATATCAGCGGCATCGACATCGTGCGCACCGGCGCCGACGACTTC TATGTGCTCGAGGATAATGCGCGCACGCCGTCGGGCGTGTCCTATATGCTCGAGAATCGCGAAACGATGCTTCAGATGTT TCCCGAGCTGTTCGCGAAGATTTCGGTGCGCGAGGTCAGCGATTATCCGCTCAACCTCTTGAAATCGCTCGCCGCCTGCG CGCCGCCCGCGTGCGGGGGGACGCCGACGGTCGCGGTGCTGACGCCGGGCATCCACAACAGCGCCTATTTCGAGCACAGC TTTCTCGCCGACCAGATGGGCGCCGAACTGGTCGAGGGGCATGATTTGCGCGTCGTCGACGGTCGCGTCGCGATGCGCAC GACGCAGGGCTATACGCCGATCGACGTCCTCTATCGCCGCGTCGATGACGATTTCCTCGATCCGCTCAATTTCCGAACCG ACTCGCTGCTCGGCGTGCCCGGTATCTGGGACGTCTATCGTGCCGGAGGGATCACGATCGCCAACGCGCCGGGCACCGGC ATCGCCGACGACAAGGCGCTCTACAGCTATATGCCCGACATCATCGAATTTTATACGGGCGAGAAGGCGCTGCTCCCCAA TGTGCCCACATGGCGGTGCAGCGATCCCGACCAGCTGAAGGAGGTGCTGGGCCGCCTGCCCGAACTGGTGGTCAAGGAAG TCCACGGGTCGGGCGGATACGGGATGCTCGTCGGCCCGGCGGCGACGAAGAAGGAGCTTGCGGCCTTCCGCGCGAAGCTG GAGGCCAATCCGCGCAATTATATCGCGCAGCCAACGCTGTCGCTGTCGACGGTGCCGATCTTCACCAGGGCGGGCCTCGC ACCGCGGCATGTCGATCTGCGCCCCTTTGTGCTGATGTCGCCGCGGGGCATCCGCATCACGCCGGGCGGGCTGACGCGCG TTGCGATGACCAGGGGGTCGCTCGTGGTCAATTCGAGCCAGGGCGGCGGGACGAAGGACACCTGGGTGCTGGAGGATTGA
Upstream 100 bases:
>100_bases CCCGGCATAAGCTTGGCGGCCGCGTAGCCAGACAAGCGACGCAGCAGGCAGGAAAACGCGGCCGCGCACGCCGACCAATG CGCGCGGCAGGGCCGGTGGC
Downstream 100 bases:
>100_bases TGGGGATGGGCGGCGCTTCAAAAACTGATCGTCGCCCCCGCGAAGGCGGGGGCCGCCGACAGCCTGACCCTTCGTTGCGG CGTAAGCCGCCAGCGGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED
Sequences:
>Translated_479_residues MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED >Mature_479_residues MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 53036; Mature: 53036
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFN CCCCCCCCCHHHHHHCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE VYGQDEADERLIPFDVVPRIISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVP EECCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDFYVLEDNARTPSGVSYMLENR HHHHCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHH ETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVP HHHHHHHHHHHCCCCEEEECCEEEEEECCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCC GIWDVYRAGGITIANAPGTGIADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLK CHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHH EVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKLEANPRNYIAQPTLSLSTVPI HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCCEEECCH FTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED HHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEECCCEEEECCCCCCCCCCEEECC >Mature Secondary Structure MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFN CCCCCCCCCHHHHHHCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE VYGQDEADERLIPFDVVPRIISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVP EECCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDFYVLEDNARTPSGVSYMLENR HHHHCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHH ETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVP HHHHHHHHHHHCCCCEEEECCEEEEEECCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCC GIWDVYRAGGITIANAPGTGIADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLK CHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHH EVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKLEANPRNYIAQPTLSLSTVPI HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCCEEECCH FTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED HHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEECCCEEEECCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]