Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487299

Identifier: 103487299

GI number: 103487299

Start: 1912682

End: 1914121

Strand: Reverse

Name: 103487299

Synonym: Sala_1815

Alternate gene names: NA

Gene position: 1914121-1912682 (Counterclockwise)

Preceding gene: 103487301

Following gene: 103487298

Centisome position: 57.22

GC content: 64.51

Gene sequence:

>1440_bases
ATGTTGCGTGGAAAGGGCTGGGGCATTTCCTTTTTCGACGAGATGACGGGACAGGATGGCGCGGTCCGGGCGCCCTATCG
CGACTATGCGGACTGGTTCGGCCGCGAGGACGCGGCGCGCATCCAGCGCAAGGCACAGCAGGCCGAGGCCTTTTTCCGCA
CCACGGGCATCACCTTCAACGTCTATGGGCAGGACGAGGCCGACGAGCGGCTGATCCCCTTCGACGTTGTGCCGCGGATC
ATTTCAGCGAGCGAATGGCGGCGGTTGTCGCGCGGTATCGAACAGCGCGTGCGCGCCCTCAACGCCTTTCTCCACGACAT
CTATCATCGGCAGGAGATTTTGCGCGCGGGGCGCGTGCCGACCGAGCTGATTTCGCGCAACGAGGCCTTCCTGCCGATGA
TGATGGGCATGGATCCGCCGGGGGGTGTCTATACGCATATCAGCGGCATCGACATCGTGCGCACCGGCGCCGACGACTTC
TATGTGCTCGAGGATAATGCGCGCACGCCGTCGGGCGTGTCCTATATGCTCGAGAATCGCGAAACGATGCTTCAGATGTT
TCCCGAGCTGTTCGCGAAGATTTCGGTGCGCGAGGTCAGCGATTATCCGCTCAACCTCTTGAAATCGCTCGCCGCCTGCG
CGCCGCCCGCGTGCGGGGGGACGCCGACGGTCGCGGTGCTGACGCCGGGCATCCACAACAGCGCCTATTTCGAGCACAGC
TTTCTCGCCGACCAGATGGGCGCCGAACTGGTCGAGGGGCATGATTTGCGCGTCGTCGACGGTCGCGTCGCGATGCGCAC
GACGCAGGGCTATACGCCGATCGACGTCCTCTATCGCCGCGTCGATGACGATTTCCTCGATCCGCTCAATTTCCGAACCG
ACTCGCTGCTCGGCGTGCCCGGTATCTGGGACGTCTATCGTGCCGGAGGGATCACGATCGCCAACGCGCCGGGCACCGGC
ATCGCCGACGACAAGGCGCTCTACAGCTATATGCCCGACATCATCGAATTTTATACGGGCGAGAAGGCGCTGCTCCCCAA
TGTGCCCACATGGCGGTGCAGCGATCCCGACCAGCTGAAGGAGGTGCTGGGCCGCCTGCCCGAACTGGTGGTCAAGGAAG
TCCACGGGTCGGGCGGATACGGGATGCTCGTCGGCCCGGCGGCGACGAAGAAGGAGCTTGCGGCCTTCCGCGCGAAGCTG
GAGGCCAATCCGCGCAATTATATCGCGCAGCCAACGCTGTCGCTGTCGACGGTGCCGATCTTCACCAGGGCGGGCCTCGC
ACCGCGGCATGTCGATCTGCGCCCCTTTGTGCTGATGTCGCCGCGGGGCATCCGCATCACGCCGGGCGGGCTGACGCGCG
TTGCGATGACCAGGGGGTCGCTCGTGGTCAATTCGAGCCAGGGCGGCGGGACGAAGGACACCTGGGTGCTGGAGGATTGA

Upstream 100 bases:

>100_bases
CCCGGCATAAGCTTGGCGGCCGCGTAGCCAGACAAGCGACGCAGCAGGCAGGAAAACGCGGCCGCGCACGCCGACCAATG
CGCGCGGCAGGGCCGGTGGC

Downstream 100 bases:

>100_bases
TGGGGATGGGCGGCGCTTCAAAAACTGATCGTCGCCCCCGCGAAGGCGGGGGCCGCCGACAGCCTGACCCTTCGTTGCGG
CGTAAGCCGCCAGCGGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI
ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF
YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS
FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG
IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL
EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED

Sequences:

>Translated_479_residues
MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI
ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF
YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS
FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG
IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL
EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED
>Mature_479_residues
MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFNVYGQDEADERLIPFDVVPRI
ISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVPTELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDF
YVLEDNARTPSGVSYMLENRETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS
FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVPGIWDVYRAGGITIANAPGTG
IADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLKEVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKL
EANPRNYIAQPTLSLSTVPIFTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED

Specific function: Unknown

COG id: COG2308

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis RV2411c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007297
- InterPro:   IPR007302
- InterPro:   IPR016450 [H]

Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]

EC number: NA

Molecular weight: Translated: 53036; Mature: 53036

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFN
CCCCCCCCCHHHHHHCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
VYGQDEADERLIPFDVVPRIISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVP
EECCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDFYVLEDNARTPSGVSYMLENR
HHHHCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHH
ETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVP
HHHHHHHHHHHCCCCEEEECCEEEEEECCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCC
GIWDVYRAGGITIANAPGTGIADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLK
CHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHH
EVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKLEANPRNYIAQPTLSLSTVPI
HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCCEEECCH
FTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED
HHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEECCCEEEECCCCCCCCCCEEECC
>Mature Secondary Structure
MLRGKGWGISFFDEMTGQDGAVRAPYRDYADWFGREDAARIQRKAQQAEAFFRTTGITFN
CCCCCCCCCHHHHHHCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
VYGQDEADERLIPFDVVPRIISASEWRRLSRGIEQRVRALNAFLHDIYHRQEILRAGRVP
EECCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TELISRNEAFLPMMMGMDPPGGVYTHISGIDIVRTGADDFYVLEDNARTPSGVSYMLENR
HHHHCCCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHH
ETMLQMFPELFAKISVREVSDYPLNLLKSLAACAPPACGGTPTVAVLTPGIHNSAYFEHS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
FLADQMGAELVEGHDLRVVDGRVAMRTTQGYTPIDVLYRRVDDDFLDPLNFRTDSLLGVP
HHHHHHHHHHHCCCCEEEECCEEEEEECCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCC
GIWDVYRAGGITIANAPGTGIADDKALYSYMPDIIEFYTGEKALLPNVPTWRCSDPDQLK
CHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHH
EVLGRLPELVVKEVHGSGGYGMLVGPAATKKELAAFRAKLEANPRNYIAQPTLSLSTVPI
HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCCEEECCH
FTRAGLAPRHVDLRPFVLMSPRGIRITPGGLTRVAMTRGSLVVNSSQGGGTKDTWVLED
HHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEECCCEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1368738; 8590279; 8905231 [H]