| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is kefBC [H]
Identifier: 103487287
GI number: 103487287
Start: 1898481
End: 1900379
Strand: Reverse
Name: kefBC [H]
Synonym: Sala_1803
Alternate gene names: 103487287
Gene position: 1900379-1898481 (Counterclockwise)
Preceding gene: 103487288
Following gene: 103487286
Centisome position: 56.81
GC content: 66.46
Gene sequence:
>1899_bases ATGATCCTGCCCGCGCTTGCGGCCGCAACCGCCCGGGTGGCGGAAAAAGCGGTCGAAACCGCTACCGATACCGCGCTGCT CGAAGGCGCGATCCTGCTCGGTGTCGCAACGCTCTTCGTGCTGATTTTCCGCCGGCTCGGTTTGGGCGCGGTGCTCGGCT ATCTCATCGCCGGCGCGATCGTCGGGCCGCACGGGCTGGCGCTGGTCGGCGGCGGCGAATCGAAGCTCGCGATTGCCGAA CTTGGCATTGCCTTCCTGCTGTTCCTCGTCGGACTGGAGCTTCATCCGCGGCGGCTGTGGCAGCTGCGCCGCGCGATCTT CGGGCTTGGCATGACGCAGGTGATCGTCACCGGGCTGATCCTCACAGCTCTTATCTACGTAGTGCTGGGGTTCAGTCCCG CTGCCGCGATCGCGCTCGGCCTGCCGCTGGCACTTTCGTCGACCGCGCAGGTGCTGCCCGGCCTCAAAAGCTCGGGGCGC ATCAACTCGCCGTTCGGAGAGAAGGCCTTTTCGATCCTGCTGTTTCAGGATCTGGCGATCGTACCGATGATTACGATCGT CGCCGCGCTATCGCGCGCCCCCGCTGACCCGTCGGCGCCACCCGGCTGGATGCTCGCGCTCTATACGGTGGGTGCGATCG TCGGGCTGGTGCTCGCGGGGCGGTTCATCCTCAACCCGCTGCTCCGGCTTATCGGCCGCTATGGCGAACGCGAGCTGTTC GTCGTCGTCGGCCTGCTCGCGGTGCTCGCGAGCGCGGCGCTGATGCACAGCCTGCATCTGTCGACCGCGCTCGGGGCGTT CATCGCGGGCGTGATGCTCGCCGATTCGCCCTATCGGCACGAAATCGAAGCCGATGTCGAACCCTTCCGCCTGATCCTGC TCGGCCTCTTCTTCCTCGCAGTGGGAATGGTGCTCGACATCAATGTCGTGCTCGCCGACCCGCTGCGCGTTGTCGGGCTC GCGGCGGCGCTGGTCGCGGTCAAGCTCGCCGTCCTGACAGCGATTGTCCGTGCATTCGGCAAATCGTGGAAGACAGCGCT CGGTCTCGGCCTTCTGCTCAGCCAGGGCGGCGAGTTCGGTTTCCTGCTGTTCACGCAAGCTCAGCAGGCGCTGCTCATCG CGCCCGAGGCGGCGAGCCTGTTCAGCGCGGTGGTGACGCTGTCGATGATCACGACGCCGTTCCTGATGCTGTTCGCGCGA AACCTGGAGTTCGCACCCGACCGCGATGGCCCCGTCATGGACGGCCCTGAACATGCGCCGCGCGGGTCGGCGCTGGTGAT CGGTCATGGCCGCTTCGGACAGACGGTGGCGCAGATGCTGCACGCAGTCGATTGTTCGGTCACCTTGATTGACAAGAAAC CGAGCCAGATCGAACGGTCGGGGCGCTACGATAACAAAGTCTATTATGGTGATGGGCTGCGGATCGACCTGCTGCGGCGC GCAGGCGCCGACGACGCAAAGCTCATCATCTATTGCATCGACGACGCCGCATTCGACGCAGCGACGATGCGCCCGATCGT CGAGGCGTTTCCGCATGCGCGTGTGCTGGCGCGTGTGTTCGACCGCCGCCAGCTGATCGCGATCGACGGGGCGGGCGTGT CGGCGGCGGTGCGCGAAGTGTTCGAAAGCTCGGTCGCGCTCGGCCGCAAGGCGCTCGAGGAACTCGACGTCGATCCGCGC GAGATCGAGGATGTCGAGGCCGCCTTCCGCCAGCTCGACGCAACGCGGCTGGCGGCGCAGATCGATGAAGGCGACATCGG CGCAGGCATGGACCATCGCTTCAGGCCCGGCGGCGGGCGCGAGGCCGACAGCGTGATCGAAACCTTCCGTCAACGCCGCC GCGCGGCGAAGGCGGCGCGCGAAGAGAGCGATGCGAGCGGCGTGACAGTCGACACCTGA
Upstream 100 bases:
>100_bases ACCTCCTCGCCCCCGCGCGTGACTATCCGGCGCGGCACGGGGCAATCCTGCTGCCCTTCGATGCGGCCATAGCGGCGCTC GAGGCGCGGGCGGCGGCGGC
Downstream 100 bases:
>100_bases TCGCTCCCGTGCGCGCTTCCTGATTGCAATCAAGGTCGGCGACGCCTCGCCGCGCGCAGCGGCGACGGCCCGCCTTCCGG ATAATAGTCAATTACTCACT
Product: sodium/hydrogen exchanger
Products: Proton [Cytoplasm]; K (I) [Periplasm] [C]
Alternate protein names: K(+)/H(+) antiporter [H]
Number of amino acids: Translated: 632; Mature: 632
Protein sequence:
>632_residues MILPALAAATARVAEKAVETATDTALLEGAILLGVATLFVLIFRRLGLGAVLGYLIAGAIVGPHGLALVGGGESKLAIAE LGIAFLLFLVGLELHPRRLWQLRRAIFGLGMTQVIVTGLILTALIYVVLGFSPAAAIALGLPLALSSTAQVLPGLKSSGR INSPFGEKAFSILLFQDLAIVPMITIVAALSRAPADPSAPPGWMLALYTVGAIVGLVLAGRFILNPLLRLIGRYGERELF VVVGLLAVLASAALMHSLHLSTALGAFIAGVMLADSPYRHEIEADVEPFRLILLGLFFLAVGMVLDINVVLADPLRVVGL AAALVAVKLAVLTAIVRAFGKSWKTALGLGLLLSQGGEFGFLLFTQAQQALLIAPEAASLFSAVVTLSMITTPFLMLFAR NLEFAPDRDGPVMDGPEHAPRGSALVIGHGRFGQTVAQMLHAVDCSVTLIDKKPSQIERSGRYDNKVYYGDGLRIDLLRR AGADDAKLIIYCIDDAAFDAATMRPIVEAFPHARVLARVFDRRQLIAIDGAGVSAAVREVFESSVALGRKALEELDVDPR EIEDVEAAFRQLDATRLAAQIDEGDIGAGMDHRFRPGGGREADSVIETFRQRRRAAKAAREESDASGVTVDT
Sequences:
>Translated_632_residues MILPALAAATARVAEKAVETATDTALLEGAILLGVATLFVLIFRRLGLGAVLGYLIAGAIVGPHGLALVGGGESKLAIAE LGIAFLLFLVGLELHPRRLWQLRRAIFGLGMTQVIVTGLILTALIYVVLGFSPAAAIALGLPLALSSTAQVLPGLKSSGR INSPFGEKAFSILLFQDLAIVPMITIVAALSRAPADPSAPPGWMLALYTVGAIVGLVLAGRFILNPLLRLIGRYGERELF VVVGLLAVLASAALMHSLHLSTALGAFIAGVMLADSPYRHEIEADVEPFRLILLGLFFLAVGMVLDINVVLADPLRVVGL AAALVAVKLAVLTAIVRAFGKSWKTALGLGLLLSQGGEFGFLLFTQAQQALLIAPEAASLFSAVVTLSMITTPFLMLFAR NLEFAPDRDGPVMDGPEHAPRGSALVIGHGRFGQTVAQMLHAVDCSVTLIDKKPSQIERSGRYDNKVYYGDGLRIDLLRR AGADDAKLIIYCIDDAAFDAATMRPIVEAFPHARVLARVFDRRQLIAIDGAGVSAAVREVFESSVALGRKALEELDVDPR EIEDVEAAFRQLDATRLAAQIDEGDIGAGMDHRFRPGGGREADSVIETFRQRRRAAKAAREESDASGVTVDT >Mature_632_residues MILPALAAATARVAEKAVETATDTALLEGAILLGVATLFVLIFRRLGLGAVLGYLIAGAIVGPHGLALVGGGESKLAIAE LGIAFLLFLVGLELHPRRLWQLRRAIFGLGMTQVIVTGLILTALIYVVLGFSPAAAIALGLPLALSSTAQVLPGLKSSGR INSPFGEKAFSILLFQDLAIVPMITIVAALSRAPADPSAPPGWMLALYTVGAIVGLVLAGRFILNPLLRLIGRYGERELF VVVGLLAVLASAALMHSLHLSTALGAFIAGVMLADSPYRHEIEADVEPFRLILLGLFFLAVGMVLDINVVLADPLRVVGL AAALVAVKLAVLTAIVRAFGKSWKTALGLGLLLSQGGEFGFLLFTQAQQALLIAPEAASLFSAVVTLSMITTPFLMLFAR NLEFAPDRDGPVMDGPEHAPRGSALVIGHGRFGQTVAQMLHAVDCSVTLIDKKPSQIERSGRYDNKVYYGDGLRIDLLRR AGADDAKLIIYCIDDAAFDAATMRPIVEAFPHARVLARVFDRRQLIAIDGAGVSAAVREVFESSVALGRKALEELDVDPR EIEDVEAAFRQLDATRLAAQIDEGDIGAGMDHRFRPGGGREADSVIETFRQRRRAAKAAREESDASGVTVDT
Specific function: Transport system that facilitate potassium-efflux, possibly by potassium-proton antiport [H]
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI157388921, Length=382, Percent_Identity=26.9633507853403, Blast_Score=76, Evalue=9e-14, Organism=Escherichia coli, GI1786232, Length=549, Percent_Identity=40.0728597449909, Blast_Score=378, Evalue=1e-106, Organism=Escherichia coli, GI1789749, Length=551, Percent_Identity=39.9274047186933, Blast_Score=344, Evalue=9e-96, Organism=Escherichia coli, GI1786685, Length=543, Percent_Identity=27.4401473296501, Blast_Score=116, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 67016; Mature: 67016
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILPALAAATARVAEKAVETATDTALLEGAILLGVATLFVLIFRRLGLGAVLGYLIAGAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGPHGLALVGGGESKLAIAELGIAFLLFLVGLELHPRRLWQLRRAIFGLGMTQVIVTGLI CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH LTALIYVVLGFSPAAAIALGLPLALSSTAQVLPGLKSSGRINSPFGEKAFSILLFQDLAI HHHHHHHHHCCCHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VPMITIVAALSRAPADPSAPPGWMLALYTVGAIVGLVLAGRFILNPLLRLIGRYGERELF HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH VVVGLLAVLASAALMHSLHLSTALGAFIAGVMLADSPYRHEIEADVEPFRLILLGLFFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH VGMVLDINVVLADPLRVVGLAAALVAVKLAVLTAIVRAFGKSWKTALGLGLLLSQGGEFG HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FLLFTQAQQALLIAPEAASLFSAVVTLSMITTPFLMLFARNLEFAPDRDGPVMDGPEHAP EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC RGSALVIGHGRFGQTVAQMLHAVDCSVTLIDKKPSQIERSGRYDNKVYYGDGLRIDLLRR CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCEEEECCCCEEHHHHH AGADDAKLIIYCIDDAAFDAATMRPIVEAFPHARVLARVFDRRQLIAIDGAGVSAAVREV CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHH FESSVALGRKALEELDVDPREIEDVEAAFRQLDATRLAAQIDEGDIGAGMDHRFRPGGGR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC EADSVIETFRQRRRAAKAAREESDASGVTVDT CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC >Mature Secondary Structure MILPALAAATARVAEKAVETATDTALLEGAILLGVATLFVLIFRRLGLGAVLGYLIAGAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGPHGLALVGGGESKLAIAELGIAFLLFLVGLELHPRRLWQLRRAIFGLGMTQVIVTGLI CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH LTALIYVVLGFSPAAAIALGLPLALSSTAQVLPGLKSSGRINSPFGEKAFSILLFQDLAI HHHHHHHHHCCCHHHHHHHHCCHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VPMITIVAALSRAPADPSAPPGWMLALYTVGAIVGLVLAGRFILNPLLRLIGRYGERELF HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH VVVGLLAVLASAALMHSLHLSTALGAFIAGVMLADSPYRHEIEADVEPFRLILLGLFFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH VGMVLDINVVLADPLRVVGLAAALVAVKLAVLTAIVRAFGKSWKTALGLGLLLSQGGEFG HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FLLFTQAQQALLIAPEAASLFSAVVTLSMITTPFLMLFARNLEFAPDRDGPVMDGPEHAP EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC RGSALVIGHGRFGQTVAQMLHAVDCSVTLIDKKPSQIERSGRYDNKVYYGDGLRIDLLRR CCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCEEEECCCCEEHHHHH AGADDAKLIIYCIDDAAFDAATMRPIVEAFPHARVLARVFDRRQLIAIDGAGVSAAVREV CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHH FESSVALGRKALEELDVDPREIEDVEAAFRQLDATRLAAQIDEGDIGAGMDHRFRPGGGR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC EADSVIETFRQRRRAAKAAREESDASGVTVDT CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; K (I) [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + K (I) [Cytoplasm] = Proton [Cytoplasm] + K (I) [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]