| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487282
Identifier: 103487282
GI number: 103487282
Start: 1893890
End: 1895677
Strand: Reverse
Name: 103487282
Synonym: Sala_1798
Alternate gene names: NA
Gene position: 1895677-1893890 (Counterclockwise)
Preceding gene: 103487285
Following gene: 103487281
Centisome position: 56.67
GC content: 72.09
Gene sequence:
>1788_bases ATGAAGCGAACGACCCTGTCCCTGGCGCTGGGCCTGTCGGCGGCGGTGCTGGTGCTGCCGGCGATCGCGCAGGAATCGCT GTTGCCCGAAGGGTTCGGCAATCCCGCCGACACACCCGCGCCGCGTCCCGCCCCGACGCCCGCGCCGTCGCCGACGCCGG GGCCGCCCGTGAATGGCAGCGCGCCGCCCGTGGTCGTCCCGACGGTCGGCAGCGCCGACAGCGATGCCGACGATGATGAG GAAGCAGGTGACGAAGAGGTCGAATCGGGCGGGCTGAAATATGACCTGCCCCCCGGCGCGCGCCGCCTGCTGACGCGCAT CGGACCGCTGACCCCCGCAACCGGCGGGATGGCGCCCGACGCCTTTGGGGTGCGCGGCCAATATGCCGCGGCGATCATGC GGAAGACGAATGGCCAGTTCGCGTCGCGCTGGGGGCAGATACTGCTCCGCCGCGCGCTGGCCTCGGCAATCGACACACCC GCGACGATCAACGGCGCCGACCTGGCCGCCGAGCGCGCGTCGCTGCTGCTCCGCATGGGCGAATCGACGGCGGCGCGGCG GATCGTCCAGTCGGTCGATTACGACCGCGCCACCCCCCGTCTCGTCGCCGCGGCACAACAGGTCTATCTGGCCACTGCCG ACCCGGCGGGACTCTGCCCCTATGTGCCTGCGGGCCTGGCGCATGGCGACGAGCATAGCTGGCGGCTTGCGTCGGCGATC TGTTCGGGGCTGTCGGGCGAGGCGGGGCCGGCAGGCTGGGCGATCGGGCGCGTGCGGTCGAGCGGCAGGCTGTCGAACTT CGACATCCTGCTCACTGAGCGCGTACTCGGCGCGACGGGCGCCGGGCGGCGGTCGACGACGATCGAATGGGACAATGTCG ACCGGCTGACGAGCTGGCGCTTCGGCATGGCGACCGCGACGGCGATTCCGGTGCCCGATGCGCTGCGCGCCGCGGCGCCC GCCTATATGAAGGGCTGGACCGTCCTCGCGCCGATGACCGACATTGCGCAGCGCGTTGCCGCGGCGCCGGAAGCGGCAGC GCGCGGCGTGCTGTCGAGCGACGCTTATGTGTCGCTGTTGAGCGCAGCCGCGGGCGAGGAGGAGCCGAGCGAGGCACTGA CCGCACAGACCGTCCAGCTGCGCACCGCGTTCAGCGCGGCGGCCGGTGCCGATCGTTATGCGGCGATGGAGGAACTTTGG AGCGCGGCGAGGACGCCCGCGGAGGCCTATGCGGCGATGATCGCGACCGCGCGCGCGGCCGCGGCGCTTCCCCCCGGCAC CGATGTCGGCGGCGATCCGTGGCAGCTCCTCGGTTCGATGCTCGCAGCGGGCTATGATGCCAACGCGCTGGCGTGGGCGT CCAATGTGACGCCGGGAAGCCATGCCTGGGGAGTCCTTGCGGTCGGCTCGCCGCGCGCGCTGAACGGCCTGAGCGCGAGC ACCGTCGAGCGTTTTTCGAACGCGGACGACAGCGCCGCTTCTCTGCGGTCGAAGTTCCTGCTTGCGGGGCTTGCCGGGCT CGGACGCCTCGATGCCGCCGCCGCCGCCGCGGCGGCGCGCGATCTCGACGTCGATCTGGGACGGCAGACGCGCTGGACGC GAGCGATCGCAGCGGCGGCCGAGCGCCGGGAGCCCGGAATGGTCGCCTTGCTCGCGGCAGCCGGGATGCAGGGCGACTGG TCGAAGGTGCCGCCCTATCACCTCTATAATATCGTCCGCGCGCTGCGCGAGGTGGGGCTCGCCGCCGAAGCGCGGATGAT CGCCGCTGAAGCGCTGGTGCGTGTCTGA
Upstream 100 bases:
>100_bases TTTTGCTGCGAGCCAAACGGGATGAACCAAGCCCGCGCGATATTCCGCGCCGGTCGATCGAGGTGGATGTGAACGACAAG ATGGCCGAAAGCCCGCTGCC
Downstream 100 bases:
>100_bases CGCGGCCTCAATAGACCGCTTTCTGGAGATGATGGCGGCCGAGCGCGGTGCTTCCCGCAACACGCTCACTGCCTATCGCC GCGATCTGGAGCAGGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 595; Mature: 595
Protein sequence:
>595_residues MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV
Sequences:
>Translated_595_residues MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV >Mature_595_residues MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61239; Mature: 61239
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGS CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APPVVVPTVGSADSDADDDEEAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPD CCCEEEECCCCCCCCCCCCHHCCCHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCC AFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTPATINGADLAAERASLLLRMG CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC ESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI CHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWR HCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHCCCCCCCCCCEEECCCCHHHHHHH FGMATATAIPVPDALRAAAPAYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLL HCHHHHCCCCCCHHHHHHCCHHHCCCEEECCHHHHHHHHHCCCHHHHHCCCCCHHHHHHH SAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELWSAARTPAEAYAAMIATARAA HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCHHCCCCCHH TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAA HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ERREPGMVALLAAAGMQGDWSKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGS CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APPVVVPTVGSADSDADDDEEAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPD CCCEEEECCCCCCCCCCCCHHCCCHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCC AFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTPATINGADLAAERASLLLRMG CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC ESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI CHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWR HCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHCCCCCCCCCCEEECCCCHHHHHHH FGMATATAIPVPDALRAAAPAYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLL HCHHHHCCCCCCHHHHHHCCHHHCCCEEECCHHHHHHHHHCCCHHHHHCCCCCHHHHHHH SAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELWSAARTPAEAYAAMIATARAA HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCHHCCCCCHH TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAA HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ERREPGMVALLAAAGMQGDWSKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA