| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487269
Identifier: 103487269
GI number: 103487269
Start: 1884124
End: 1885338
Strand: Reverse
Name: 103487269
Synonym: Sala_1785
Alternate gene names: NA
Gene position: 1885338-1884124 (Counterclockwise)
Preceding gene: 103487271
Following gene: 103487268
Centisome position: 56.36
GC content: 68.56
Gene sequence:
>1215_bases ATGTCAATTCAGTGGATGCGCTGCGCATCCTGTCTCATCCCTGCCACGCTGGGTGTGCTGGCCCCGTCGCTTGCTACACC TGTTGCGGCGCAGGAACCCCTGACAGAGAGCCGTGCGATCGCATTGGCGCTGGCGCAGGAAGGGATCGCCGGGCGCGATG ATGCCGACCGCGCTGCTGCGGCGGCCGAGGTCGATGTGATCGGCCCGCTCGACAATCCGCAGCTGGAATTGGCGCGCGAA GGCGGCGGGGGTGAAACCGAATATCAGCTCCATCTGGTGCAGCCGATCGATCTGGTCGGCCGCCGCGCCGCCTTGCGCGA TGCGGCGCGGGCCGACGCTGAGGCGACCGCTGCCGATATCGAACGCCGGCGCCAGTTGATGATCGCCGATGTGCGCAGCG CCTATGTCCGCTGTGCGGCGGCTTCGGCGCAGGCCGATATCTGGCAGGCCTACATCGCCGATGTGAACGAAGCGCTGCGG ATTGCCACTGCGCGGGCGGAGGCGGGGGATACGGCGGTGTATGACGTGCGCCGGGTGCGGGTGCAGGCCAGCGCGGCAGA GGCCGGGCGCTTGCAGGCTGATGGCGCGCGCCGGGCGGATTGCGCCACGCTGGGCGGGCTCACCGGGGTGGCTGATCCGG CGGTCGCGATCGAGGCGATCACCGCGCTTGGCCAAGCCGACACATCAGCGGGCGAACGCGCTGATCTGATCGCGCAGCAG CAGCGGATCACCGCCGCCGAGTATCGGATCACTGCGGCTGAACGCGCGCGCTGGCCGCAGCTTTCGGTCGGTGCCGGGGT GCGCGGGCTCGATGATGGTACGGGCACGCGATATGGCCCGACCATCTCGCTTGGGGTGTCGTTGCCGCTCTGGAACGGCG GCGGTGCGGCTGTGCGGCAGGAAGATGCAAGGCGCACTTCGCTGGAGGCGGAACTAGCCATCGCCCGCCGCCAGATTGCC GCCGAACAGTCCGCAGCCAGCGCGCGGCTGTCCTCCTCACGCGCTGCTGCCGTGGCCGCCATTAGCGCGCGCGATGATGC CGGGCGGCTCGGCACGATAGCCAATACAGCTTACCAATCGGGCGAAATCGGGGTCGTCGAACTGCTCGACGCCTACGAAG CCGCGCGCGACGCTGACCTTTCTGTGGTCGCTTTCGCGCTCGATGCCGCGCTGGCGGCGGTTACCTACGATCTTACCACT GGAAGGAGCTACTGA
Upstream 100 bases:
>100_bases GCGCCCGAAAGCCCACCGAACAATCTTCTGAGACCTCCGCGAACGGTCTGACGCGCCTGCCGGGCGATGGCCCGGTCGTC TGACCCATGCGGAGAATATC
Downstream 100 bases:
>100_bases TGAAAAAGACGATCCTGATTGCCGCGATACCGGGCCTGCTGACGCTGACCGCCTGCGGCGAGGCAGCCGACACCGCCGAA GCGCCCGAAGCTGCGCCTGA
Product: outer membrane efflux protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MSIQWMRCASCLIPATLGVLAPSLATPVAAQEPLTESRAIALALAQEGIAGRDDADRAAAAAEVDVIGPLDNPQLELARE GGGGETEYQLHLVQPIDLVGRRAALRDAARADAEATAADIERRRQLMIADVRSAYVRCAAASAQADIWQAYIADVNEALR IATARAEAGDTAVYDVRRVRVQASAAEAGRLQADGARRADCATLGGLTGVADPAVAIEAITALGQADTSAGERADLIAQQ QRITAAEYRITAAERARWPQLSVGAGVRGLDDGTGTRYGPTISLGVSLPLWNGGGAAVRQEDARRTSLEAELAIARRQIA AEQSAASARLSSSRAAAVAAISARDDAGRLGTIANTAYQSGEIGVVELLDAYEAARDADLSVVAFALDAALAAVTYDLTT GRSY
Sequences:
>Translated_404_residues MSIQWMRCASCLIPATLGVLAPSLATPVAAQEPLTESRAIALALAQEGIAGRDDADRAAAAAEVDVIGPLDNPQLELARE GGGGETEYQLHLVQPIDLVGRRAALRDAARADAEATAADIERRRQLMIADVRSAYVRCAAASAQADIWQAYIADVNEALR IATARAEAGDTAVYDVRRVRVQASAAEAGRLQADGARRADCATLGGLTGVADPAVAIEAITALGQADTSAGERADLIAQQ QRITAAEYRITAAERARWPQLSVGAGVRGLDDGTGTRYGPTISLGVSLPLWNGGGAAVRQEDARRTSLEAELAIARRQIA AEQSAASARLSSSRAAAVAAISARDDAGRLGTIANTAYQSGEIGVVELLDAYEAARDADLSVVAFALDAALAAVTYDLTT GRSY >Mature_403_residues SIQWMRCASCLIPATLGVLAPSLATPVAAQEPLTESRAIALALAQEGIAGRDDADRAAAAAEVDVIGPLDNPQLELAREG GGGETEYQLHLVQPIDLVGRRAALRDAARADAEATAADIERRRQLMIADVRSAYVRCAAASAQADIWQAYIADVNEALRI ATARAEAGDTAVYDVRRVRVQASAAEAGRLQADGARRADCATLGGLTGVADPAVAIEAITALGQADTSAGERADLIAQQQ RITAAEYRITAAERARWPQLSVGAGVRGLDDGTGTRYGPTISLGVSLPLWNGGGAAVRQEDARRTSLEAELAIARRQIAA EQSAASARLSSSRAAAVAAISARDDAGRLGTIANTAYQSGEIGVVELLDAYEAARDADLSVVAFALDAALAAVTYDLTTG RSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41929; Mature: 41798
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQWMRCASCLIPATLGVLAPSLATPVAAQEPLTESRAIALALAQEGIAGRDDADRAAA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEHHCCCCCCCCHHHHHH AAEVDVIGPLDNPQLELAREGGGGETEYQLHLVQPIDLVGRRAALRDAARADAEATAADI HCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHH ERRRQLMIADVRSAYVRCAAASAQADIWQAYIADVNEALRIATARAEAGDTAVYDVRRVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHE VQASAAEAGRLQADGARRADCATLGGLTGVADPAVAIEAITALGQADTSAGERADLIAQQ EEECHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH QRITAAEYRITAAERARWPQLSVGAGVRGLDDGTGTRYGPTISLGVSLPLWNGGGAAVRQ HHHHHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCH EDARRTSLEAELAIARRQIAAEQSAASARLSSSRAAAVAAISARDDAGRLGTIANTAYQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCC GEIGVVELLDAYEAARDADLSVVAFALDAALAAVTYDLTTGRSY CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCC >Mature Secondary Structure SIQWMRCASCLIPATLGVLAPSLATPVAAQEPLTESRAIALALAQEGIAGRDDADRAAA CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEHHCCCCCCCCHHHHHH AAEVDVIGPLDNPQLELAREGGGGETEYQLHLVQPIDLVGRRAALRDAARADAEATAADI HCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHH ERRRQLMIADVRSAYVRCAAASAQADIWQAYIADVNEALRIATARAEAGDTAVYDVRRVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHE VQASAAEAGRLQADGARRADCATLGGLTGVADPAVAIEAITALGQADTSAGERADLIAQQ EEECHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH QRITAAEYRITAAERARWPQLSVGAGVRGLDDGTGTRYGPTISLGVSLPLWNGGGAAVRQ HHHHHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCH EDARRTSLEAELAIARRQIAAEQSAASARLSSSRAAAVAAISARDDAGRLGTIANTAYQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCC GEIGVVELLDAYEAARDADLSVVAFALDAALAAVTYDLTTGRSY CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA