| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487257
Identifier: 103487257
GI number: 103487257
Start: 1870218
End: 1870496
Strand: Reverse
Name: 103487257
Synonym: Sala_1772
Alternate gene names: NA
Gene position: 1870496-1870218 (Counterclockwise)
Preceding gene: 103487264
Following gene: 103487254
Centisome position: 55.92
GC content: 63.08
Gene sequence:
>279_bases TTGCCCCCACGCTACCCCGGAGCTTGCTGCGGGCGGAAGACAGGTTTGATCCGGCATGACTGCGCGCTGCCATGGATCGC GGATCAAGTCTCCCGAATGACGGGCTATGGGAGCGACCGGAAGCCAATCTCCGCGGGCGAATCGACGCCCGGCGTTCACG CAAAAGAAAAGGGCCCCGGCGATGCCGGAGCCCTTGTCTTAAAATCGTTCCAGATTAGGCCTGGCCGCCAGCACTGTCAG TGCCACCGCCGCCCAGGAAGCGCCAAAACCAACCCATGA
Upstream 100 bases:
>100_bases GCGGGCGGGAGAGCATGGAGAGCATCAAGAACCGTGCCGGCATCGGCGGAGGTATGCGGATCCGGCCATCGCCGACGACC ACAGGCGGCCTTCGCCTTCA
Downstream 100 bases:
>100_bases CAAATCTCCTGATAAGACTGCCCACGCAGAACAGTTAACAGGGCGTATACCTTAATTAATAAGGTAAATCGAGTCTTAAC TATAAAGATTGTCGCCATTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 92; Mature: 91
Protein sequence:
>92_residues MPPRYPGACCGRKTGLIRHDCALPWIADQVSRMTGYGSDRKPISAGESTPGVHAKEKGPGDAGALVLKSFQIRPGRQHCQ CHRRPGSAKTNP
Sequences:
>Translated_92_residues MPPRYPGACCGRKTGLIRHDCALPWIADQVSRMTGYGSDRKPISAGESTPGVHAKEKGPGDAGALVLKSFQIRPGRQHCQ CHRRPGSAKTNP >Mature_91_residues PPRYPGACCGRKTGLIRHDCALPWIADQVSRMTGYGSDRKPISAGESTPGVHAKEKGPGDAGALVLKSFQIRPGRQHCQC HRRPGSAKTNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9878; Mature: 9747
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 5.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRYPGACCGRKTGLIRHDCALPWIADQVSRMTGYGSDRKPISAGESTPGVHAKEKGPG CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC DAGALVLKSFQIRPGRQHCQCHRRPGSAKTNP CHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC >Mature Secondary Structure PPRYPGACCGRKTGLIRHDCALPWIADQVSRMTGYGSDRKPISAGESTPGVHAKEKGPG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC DAGALVLKSFQIRPGRQHCQCHRRPGSAKTNP CHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA