| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487241
Identifier: 103487241
GI number: 103487241
Start: 1850665
End: 1851939
Strand: Reverse
Name: 103487241
Synonym: Sala_1756
Alternate gene names: NA
Gene position: 1851939-1850665 (Counterclockwise)
Preceding gene: 103487244
Following gene: 103487240
Centisome position: 55.36
GC content: 69.18
Gene sequence:
>1275_bases ATGATTTCGGCCGCCTTTCCCCGCTTCGCCCCGAGCCTGTCCCTTCGCGCTTTTGCACCCCGCGACTGGCGCTGGGCGGC GCTCATCGGCCTTTTCTTCGCGATCCTGCTCGCCGGGATCGTGGATGGACAGATCATGCGGGGCAATCGCGGCATCACGC CGATCAATTCGAGCGGCGATTTCCTGGCGAGCGGCATCCGCATCGACGTCACCGGCGACAATGCCGACGATGCGCGGACA AAGGGCTGGCGCGAGGCGCAGCGGCGGGGATGGGCGCAGCTCTATCGCCGCCTCAACGGCACCGACGGCCCGGCGCTCAG CGATTCGGTGCTCGACGGCATCGTCACCGCGATCGTCGTCGAGGAGGAACAGATCGGCCCGCGCCGCTATGTCGCGCGGC TCGGCGTCCAGTTCGACCGCGTGCGCGCGGGACAGATTCTCGGCGTCAGCGGACGCACGCTGCGCTCGCCGCCGCTGCTC GTCATCCCGGTCTATTCGGTCGATGGCATCCAGCAGGTGTTCGAACAGCGCAGCGCGTGGCAGCGCGCCTGGGCCGAATA TAATACGGGGCAGAGCGCGATCGACTATGTCCGCACCGCGGGCACCGGCGCCGACACGCTGCTGCTCAATCCGGGGCAGA TCGGGCGCCGCAGCCGCGTATGGTGGCGCGTCATCCTCGACCAATATGGGGCGGCCGACGTGCTGATCCCGATCGCGCGC GTCGAATACAGCTATCCCGGTGGCCCGATCCGCGGCCATTTCACCGCGCGCTTCGGCCCCGACAACAAGCATATCGCCAG CTTCGCGATGACGGGACCCAGCCCCGCGGCGCTGCCCGACATGATGGAAAAGGCGGTCGCGCGCATGGACCGCATCTATA CCGAGGCGCTGGAGGCCGGTGTGCTGCGCACCGACACCTATCTCGTGCTCGAAAAGCCGATCGAGCGCGAGGACCTGCCC GAAGAGACGACCGCGAACGACACGGACGCGCTGCCCGCCGAAACCGACGGCAGCGTCCCCGTCGCGGGACCGGCGGGTGT GCAGAGCTTCACCGTCCAATATAGTTCGCCCGACGTCGAATCGGTCACCGCGACCGAGCGCGCGGTCGCCGCCGCTGCGG GAGTCCAGTCGGCATCGACGACCAGCCTCGCGCTCGGCGGCACGTCGGTGATGCGCGTGACCTTCCGCGGCGACCTGGCG GCGCTGCGTGCGGCGCTCGCGGCACGCGGCTTCACCGTGCAGGAAGGCGGCGGCCAGCTCCGGATCAGCCGCTGA
Upstream 100 bases:
>100_bases GTGCTTGGAATCCATGGCCAGCGCGACTAACGACTCTCGCCACGAAATGCCATGATTTCCTTGTCCGGGGCCAAGCTTTT GGGCAGAGCATAGAGAAGAT
Downstream 100 bases:
>100_bases TGGGGGCGCGCGCACCCTCCGGTCAGATCGCGCTGCCGCTCGACTGGAGCGCGGGCGGGGCGAACGATGGTCCGCTCGTC ATCGGCACCAGCAATGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MISAAFPRFAPSLSLRAFAPRDWRWAALIGLFFAILLAGIVDGQIMRGNRGITPINSSGDFLASGIRIDVTGDNADDART KGWREAQRRGWAQLYRRLNGTDGPALSDSVLDGIVTAIVVEEEQIGPRRYVARLGVQFDRVRAGQILGVSGRTLRSPPLL VIPVYSVDGIQQVFEQRSAWQRAWAEYNTGQSAIDYVRTAGTGADTLLLNPGQIGRRSRVWWRVILDQYGAADVLIPIAR VEYSYPGGPIRGHFTARFGPDNKHIASFAMTGPSPAALPDMMEKAVARMDRIYTEALEAGVLRTDTYLVLEKPIEREDLP EETTANDTDALPAETDGSVPVAGPAGVQSFTVQYSSPDVESVTATERAVAAAAGVQSASTTSLALGGTSVMRVTFRGDLA ALRAALAARGFTVQEGGGQLRISR
Sequences:
>Translated_424_residues MISAAFPRFAPSLSLRAFAPRDWRWAALIGLFFAILLAGIVDGQIMRGNRGITPINSSGDFLASGIRIDVTGDNADDART KGWREAQRRGWAQLYRRLNGTDGPALSDSVLDGIVTAIVVEEEQIGPRRYVARLGVQFDRVRAGQILGVSGRTLRSPPLL VIPVYSVDGIQQVFEQRSAWQRAWAEYNTGQSAIDYVRTAGTGADTLLLNPGQIGRRSRVWWRVILDQYGAADVLIPIAR VEYSYPGGPIRGHFTARFGPDNKHIASFAMTGPSPAALPDMMEKAVARMDRIYTEALEAGVLRTDTYLVLEKPIEREDLP EETTANDTDALPAETDGSVPVAGPAGVQSFTVQYSSPDVESVTATERAVAAAAGVQSASTTSLALGGTSVMRVTFRGDLA ALRAALAARGFTVQEGGGQLRISR >Mature_424_residues MISAAFPRFAPSLSLRAFAPRDWRWAALIGLFFAILLAGIVDGQIMRGNRGITPINSSGDFLASGIRIDVTGDNADDART KGWREAQRRGWAQLYRRLNGTDGPALSDSVLDGIVTAIVVEEEQIGPRRYVARLGVQFDRVRAGQILGVSGRTLRSPPLL VIPVYSVDGIQQVFEQRSAWQRAWAEYNTGQSAIDYVRTAGTGADTLLLNPGQIGRRSRVWWRVILDQYGAADVLIPIAR VEYSYPGGPIRGHFTARFGPDNKHIASFAMTGPSPAALPDMMEKAVARMDRIYTEALEAGVLRTDTYLVLEKPIEREDLP EETTANDTDALPAETDGSVPVAGPAGVQSFTVQYSSPDVESVTATERAVAAAAGVQSASTTSLALGGTSVMRVTFRGDLA ALRAALAARGFTVQEGGGQLRISR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45705; Mature: 45705
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISAAFPRFAPSLSLRAFAPRDWRWAALIGLFFAILLAGIVDGQIMRGNRGITPINSSGD CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCC FLASGIRIDVTGDNADDARTKGWREAQRRGWAQLYRRLNGTDGPALSDSVLDGIVTAIVV EEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEE EEEQIGPRRYVARLGVQFDRVRAGQILGVSGRTLRSPPLLVIPVYSVDGIQQVFEQRSAW EHHHCCHHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH QRAWAEYNTGQSAIDYVRTAGTGADTLLLNPGQIGRRSRVWWRVILDQYGAADVLIPIAR HHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEH VEYSYPGGPIRGHFTARFGPDNKHIASFAMTGPSPAALPDMMEKAVARMDRIYTEALEAG EEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC VLRTDTYLVLEKPIEREDLPEETTANDTDALPAETDGSVPVAGPAGVQSFTVQYSSPDVE CEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCH SVTATERAVAAAAGVQSASTTSLALGGTSVMRVTFRGDLAALRAALAARGFTVQEGGGQL HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHCCCEEECCCCEE RISR EECC >Mature Secondary Structure MISAAFPRFAPSLSLRAFAPRDWRWAALIGLFFAILLAGIVDGQIMRGNRGITPINSSGD CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCC FLASGIRIDVTGDNADDARTKGWREAQRRGWAQLYRRLNGTDGPALSDSVLDGIVTAIVV EEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEE EEEQIGPRRYVARLGVQFDRVRAGQILGVSGRTLRSPPLLVIPVYSVDGIQQVFEQRSAW EHHHCCHHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH QRAWAEYNTGQSAIDYVRTAGTGADTLLLNPGQIGRRSRVWWRVILDQYGAADVLIPIAR HHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEH VEYSYPGGPIRGHFTARFGPDNKHIASFAMTGPSPAALPDMMEKAVARMDRIYTEALEAG EEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC VLRTDTYLVLEKPIEREDLPEETTANDTDALPAETDGSVPVAGPAGVQSFTVQYSSPDVE CEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCH SVTATERAVAAAAGVQSASTTSLALGGTSVMRVTFRGDLAALRAALAARGFTVQEGGGQL HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHCCCEEECCCCEE RISR EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA