| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yfgE [C]
Identifier: 103487240
GI number: 103487240
Start: 1850003
End: 1850665
Strand: Reverse
Name: yfgE [C]
Synonym: Sala_1755
Alternate gene names: 103487240
Gene position: 1850665-1850003 (Counterclockwise)
Preceding gene: 103487241
Following gene: 103487239
Centisome position: 55.32
GC content: 70.74
Gene sequence:
>663_bases ATGGGGGCGCGCGCACCCTCCGGTCAGATCGCGCTGCCGCTCGACTGGAGCGCGGGCGGGGCGAACGATGGTCCGCTCGT CATCGGCACCAGCAATGCCGACGCAGTGCGTTATCTGCGCCACGTCGCGACCTGGCCCGTCCGCACCGCGGTGCTCACCG GCCCGCGCGGTTCGGGGCGCAGCCTGATGGGGCGCCTGTTCGCGCGCGACACCGGCGGCCGCGTCATCGACGGGCATACC AGCGTCGGCGAGGAAGAGCTGTTCCACGCCTGGAACGCCGCGCAGGCGAGCGGGTCGCCGCTGCTCGTCATCGCCGACGC GCCGCCCGCCGAATGGAATGTCGCGCTGCCCGACCTGCGCTCGCGCCTCGCCGCGGTGCCGGTGCTCGTCATCGGCGAGC CTGACGACTGCCTCGCGCGCGACCTGATCGAGGCACTGTTCGCGCAGCGCGGCGTCGCGCTCGCGCCGGGCGTCGCATCC TATATCGTGCCGCGCATGGAGCGCAGCTATGCCATGATCCACCGCATCGTCGCGGCGCTCGATGCCGCGTCGCTCGAACA GGGGCGCCGCCTTGGCGTCCGTCTCGCGCGTGAAACATTGCTGTCACAAGGGCTGATCGACCCCGATCTCCTCGAAAGGC AGGATGAAGACCAATGTCGATAA
Upstream 100 bases:
>100_bases GCGTGACCTTCCGCGGCGACCTGGCGGCGCTGCGTGCGGCGCTCGCGGCACGCGGCTTCACCGTGCAGGAAGGCGGCGGC CAGCTCCGGATCAGCCGCTG
Downstream 100 bases:
>100_bases CCGGTGGCCCCTTGCGGGCCGAAAATGACCAGGAAACCGGATTTCCGTCGTTCGGCCCCGAACGCTTTTTCAATCGCGAA CTGTCATGGCTCGCTTTCAA
Product: DNA replication initiation ATPase
Products: NA
Alternate protein names: Regulatory Inactivation Of DNAA Hda Protein; ATPase; DNA Replication Initiation ATPase; Chromosomal Replication Initiator Protein DNAA; DNAA-Related Protein; Chromosomal Replication Initiator; DNAA-Like Protein; ATPase-Like Protein Involved In DNA Replication Initiation; ATPase Involved In DNA Replication Initiation; Chromosomal Replication Initiator DNAa; DNA Replication Initiation ATPase Protein; DNAA-Like Protein Hda
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHT SVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVAS YIVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR
Sequences:
>Translated_220_residues MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHT SVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVAS YIVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR >Mature_219_residues GARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHTS VGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASY IVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR
Specific function: Unknown
COG id: COG0593
COG function: function code L; ATPase involved in DNA replication initiation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23454; Mature: 23323
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGR CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHEEEEECCCCCCH SLMGRLFARDTGGRVIDGHTSVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLR HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECHHHH SRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIVAAL HHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH DAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC >Mature Secondary Structure GARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGR CCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHEEEEECCCCCCH SLMGRLFARDTGGRVIDGHTSVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLR HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECHHHH SRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIVAAL HHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH DAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA