Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yfgE [C]

Identifier: 103487240

GI number: 103487240

Start: 1850003

End: 1850665

Strand: Reverse

Name: yfgE [C]

Synonym: Sala_1755

Alternate gene names: 103487240

Gene position: 1850665-1850003 (Counterclockwise)

Preceding gene: 103487241

Following gene: 103487239

Centisome position: 55.32

GC content: 70.74

Gene sequence:

>663_bases
ATGGGGGCGCGCGCACCCTCCGGTCAGATCGCGCTGCCGCTCGACTGGAGCGCGGGCGGGGCGAACGATGGTCCGCTCGT
CATCGGCACCAGCAATGCCGACGCAGTGCGTTATCTGCGCCACGTCGCGACCTGGCCCGTCCGCACCGCGGTGCTCACCG
GCCCGCGCGGTTCGGGGCGCAGCCTGATGGGGCGCCTGTTCGCGCGCGACACCGGCGGCCGCGTCATCGACGGGCATACC
AGCGTCGGCGAGGAAGAGCTGTTCCACGCCTGGAACGCCGCGCAGGCGAGCGGGTCGCCGCTGCTCGTCATCGCCGACGC
GCCGCCCGCCGAATGGAATGTCGCGCTGCCCGACCTGCGCTCGCGCCTCGCCGCGGTGCCGGTGCTCGTCATCGGCGAGC
CTGACGACTGCCTCGCGCGCGACCTGATCGAGGCACTGTTCGCGCAGCGCGGCGTCGCGCTCGCGCCGGGCGTCGCATCC
TATATCGTGCCGCGCATGGAGCGCAGCTATGCCATGATCCACCGCATCGTCGCGGCGCTCGATGCCGCGTCGCTCGAACA
GGGGCGCCGCCTTGGCGTCCGTCTCGCGCGTGAAACATTGCTGTCACAAGGGCTGATCGACCCCGATCTCCTCGAAAGGC
AGGATGAAGACCAATGTCGATAA

Upstream 100 bases:

>100_bases
GCGTGACCTTCCGCGGCGACCTGGCGGCGCTGCGTGCGGCGCTCGCGGCACGCGGCTTCACCGTGCAGGAAGGCGGCGGC
CAGCTCCGGATCAGCCGCTG

Downstream 100 bases:

>100_bases
CCGGTGGCCCCTTGCGGGCCGAAAATGACCAGGAAACCGGATTTCCGTCGTTCGGCCCCGAACGCTTTTTCAATCGCGAA
CTGTCATGGCTCGCTTTCAA

Product: DNA replication initiation ATPase

Products: NA

Alternate protein names: Regulatory Inactivation Of DNAA Hda Protein; ATPase; DNA Replication Initiation ATPase; Chromosomal Replication Initiator Protein DNAA; DNAA-Related Protein; Chromosomal Replication Initiator; DNAA-Like Protein; ATPase-Like Protein Involved In DNA Replication Initiation; ATPase Involved In DNA Replication Initiation; Chromosomal Replication Initiator DNAa; DNA Replication Initiation ATPase Protein; DNAA-Like Protein Hda

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHT
SVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVAS
YIVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR

Sequences:

>Translated_220_residues
MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHT
SVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVAS
YIVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR
>Mature_219_residues
GARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLFARDTGGRVIDGHTS
VGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASY
IVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR

Specific function: Unknown

COG id: COG0593

COG function: function code L; ATPase involved in DNA replication initiation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23454; Mature: 23323

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGR
CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHEEEEECCCCCCH
SLMGRLFARDTGGRVIDGHTSVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLR
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECHHHH
SRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIVAAL
HHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
DAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
GARAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGR
CCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHEEEEECCCCCCH
SLMGRLFARDTGGRVIDGHTSVGEEELFHAWNAAQASGSPLLVIADAPPAEWNVALPDLR
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECHHHH
SRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIVAAL
HHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
DAASLEQGRRLGVRLARETLLSQGLIDPDLLERQDEDQCR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA