| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487235
Identifier: 103487235
GI number: 103487235
Start: 1842156
End: 1843028
Strand: Reverse
Name: 103487235
Synonym: Sala_1750
Alternate gene names: NA
Gene position: 1843028-1842156 (Counterclockwise)
Preceding gene: 103487236
Following gene: 103487234
Centisome position: 55.1
GC content: 69.07
Gene sequence:
>873_bases GTGAGCGAACCCCGGGAGCATCGGCTGGAAACGCCGGACGGTGCGATCTGCTGGTTCGAATGGGGTGAGCGCGGCGAGGC CGCTTCGCTGCTCCTGCTTCACGCCACCGGCTTTCACGCGCGGCTCTGGGATCAGGTCGTCGCGGCGCTGCCCGCGGGAA CGCATGTTATCGCGCCCGATCACCGCGGCCATGGCCGCAGCTATCGCCCCGCAACGCTCGCCGACTGGGGGGCGACCGCC GATGCGCTGCTCCCGCTCCTCGACGGGTTTGGCGGACGCCCGCTTGTCGGTTGCGGACACAGCATGGGTGCCTATGTGCT GACGCGGCTTGCGTCGCAGCGTCCGGCGGCCCTCCGTCACCTCGTCCTGATCGATCCCGTTATCATGGAACCCGCGCTTT ACGAAGGCGAGAGCACCAAACCGATTCCCGATCCCGCCGACCATCCGGTCGCGCGGCGACGCAATGCGTGGACCGATGCC GATGAGATGCGTGCGCGTTTCGCCGACCGGCCGCCCTATGCGAATTGGGATCCGCGCGTGCTGGCCGATTATTGCACCCA TGGCCTGCTTCCCGCGGCGGCCGGCGAAGGGTTCGAACTCGCCTGTCCGCCCGCGCTCGAGGCGTCGGTCTATCAGAATG CGCTGCGCACCAGCCCGCACGAATGGCTACGCTATCTGTCGGTGCCGTCGACGCTGATTCGCGCCCCGACCGGCGAGCGT GGCGGCCCGCTCGATTTTTCGCTGAGCCCGACCTGGACGGGCCTTGGCCCCGCGATCGGCGCCGGGCGCGACGAATTGTG GCCGGAGCATAGCCATTTCATCCCGATGGAAGCGCCCGCGCGCGTCGCGGCGTTGCTCGCCGGGCTGCTCTGA
Upstream 100 bases:
>100_bases GAAGGCCGAGGACCTGATGATGGGTGCCCCGGCGCCGGTATCAGAGAAGCAGCTCAGGGAACTCGGAATCCGCATTGTCG ACGGTCCGAAGAGCTAAAGC
Downstream 100 bases:
>100_bases TTGTCCAGAGGGTAAGGAAGCCCGCCGATATTGTCCCGGAACATGACATCGGCGTATCGTCCTTGGTAGGACGCGCCAGC TTGCGCTAGGATCGGCGCAT
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Fold Superfamily Hydrolase; Alpha/Beta Hydrolase Superfamily Protein; Alpha/Beta Fold Hydrolase; Alpha/Beta Family Hydrolase; Alpha/Beta Hydrolase Fold-Containing Protein; Conserved Hydrolases Or Acyltransferase
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSEPREHRLETPDGAICWFEWGERGEAASLLLLHATGFHARLWDQVVAALPAGTHVIAPDHRGHGRSYRPATLADWGATA DALLPLLDGFGGRPLVGCGHSMGAYVLTRLASQRPAALRHLVLIDPVIMEPALYEGESTKPIPDPADHPVARRRNAWTDA DEMRARFADRPPYANWDPRVLADYCTHGLLPAAAGEGFELACPPALEASVYQNALRTSPHEWLRYLSVPSTLIRAPTGER GGPLDFSLSPTWTGLGPAIGAGRDELWPEHSHFIPMEAPARVAALLAGLL
Sequences:
>Translated_290_residues MSEPREHRLETPDGAICWFEWGERGEAASLLLLHATGFHARLWDQVVAALPAGTHVIAPDHRGHGRSYRPATLADWGATA DALLPLLDGFGGRPLVGCGHSMGAYVLTRLASQRPAALRHLVLIDPVIMEPALYEGESTKPIPDPADHPVARRRNAWTDA DEMRARFADRPPYANWDPRVLADYCTHGLLPAAAGEGFELACPPALEASVYQNALRTSPHEWLRYLSVPSTLIRAPTGER GGPLDFSLSPTWTGLGPAIGAGRDELWPEHSHFIPMEAPARVAALLAGLL >Mature_289_residues SEPREHRLETPDGAICWFEWGERGEAASLLLLHATGFHARLWDQVVAALPAGTHVIAPDHRGHGRSYRPATLADWGATAD ALLPLLDGFGGRPLVGCGHSMGAYVLTRLASQRPAALRHLVLIDPVIMEPALYEGESTKPIPDPADHPVARRRNAWTDAD EMRARFADRPPYANWDPRVLADYCTHGLLPAAAGEGFELACPPALEASVYQNALRTSPHEWLRYLSVPSTLIRAPTGERG GPLDFSLSPTWTGLGPAIGAGRDELWPEHSHFIPMEAPARVAALLAGLL
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31488; Mature: 31357
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPREHRLETPDGAICWFEWGERGEAASLLLLHATGFHARLWDQVVAALPAGTHVIAPD CCCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCC HRGHGRSYRPATLADWGATADALLPLLDGFGGRPLVGCGHSMGAYVLTRLASQRPAALRH CCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHH LVLIDPVIMEPALYEGESTKPIPDPADHPVARRRNAWTDADEMRARFADRPPYANWDPRV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH LADYCTHGLLPAAAGEGFELACPPALEASVYQNALRTSPHEWLRYLSVPSTLIRAPTGER HHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCC GGPLDFSLSPTWTGLGPAIGAGRDELWPEHSHFIPMEAPARVAALLAGLL CCCCCEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SEPREHRLETPDGAICWFEWGERGEAASLLLLHATGFHARLWDQVVAALPAGTHVIAPD CCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCC HRGHGRSYRPATLADWGATADALLPLLDGFGGRPLVGCGHSMGAYVLTRLASQRPAALRH CCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHH LVLIDPVIMEPALYEGESTKPIPDPADHPVARRRNAWTDADEMRARFADRPPYANWDPRV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH LADYCTHGLLPAAAGEGFELACPPALEASVYQNALRTSPHEWLRYLSVPSTLIRAPTGER HHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCC GGPLDFSLSPTWTGLGPAIGAGRDELWPEHSHFIPMEAPARVAALLAGLL CCCCCEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA