| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487233
Identifier: 103487233
GI number: 103487233
Start: 1840669
End: 1841214
Strand: Reverse
Name: 103487233
Synonym: Sala_1748
Alternate gene names: NA
Gene position: 1841214-1840669 (Counterclockwise)
Preceding gene: 103487234
Following gene: 103487226
Centisome position: 55.04
GC content: 68.68
Gene sequence:
>546_bases ATGGGCTCGATGAGCCGCGCCAAAAGATCCGACGATTGGGGGTTTCCCCGCTGGCGCCCCTATGGCTCGTCGCGCGAGGC GCGGCAGGTGCGGCTCTGCGATCGGCACGGCTGCGCCGAACCGGGCAACTGCCCCGCGCCCAAATCGCCGAACAGCCCCG AACGCTGGTATTTCTGCGAAAGCCACGCCGCCGAATATAATCGCGGCTGGGACTATTTCGCCGGGCTGAGCGCCGAGGAT GCCGCGGCGCGCGCGGCGGAGGAAGCACAGGGCGCCCGCAGCTATGCCCGCGCCCAGCATTATGCCTGGGGCGGCGCGGG CGACGGCAGCCGCAGCGCCGACGAAATGCGCGCGCTCGAAATCCTGGGCCTCGACCCCGACGCCGATTTCGACGCGACGA AAAAGGCCTGGCGCGCCTATGCGAAGGAGTGCCACCCCGACGTCAAGCCCGGCGATGCCGACGCGGCGAAGCGCTTTGCC GCCGGGCAGGCGGCGTTTGAAGTGCTGAAACAGGCCGAAGAACGCAAAAGCTGGAAACCGACCTGA
Upstream 100 bases:
>100_bases GAAACTTGCGGCCAAGGCGTTCGGTTACAAGCCAATGAATGGGTTCTGACCCTGGGATTTTCGCGCTCCTCGGCTAGCAA TCGGGCGCCCCAGCCGCTAC
Downstream 100 bases:
>100_bases GGGGCAGGGAAGCGACCGATTGCAGCCACCAATCCTCCCCTGCGGGGGAGGATCGCAACGTCCGCTCCCCCACCCCAAAA CTGCCTCGCCGTCAGCCCAA
Product: heat shock protein DnaJ-like protein
Products: NA
Alternate protein names: Heat Shock Protein DNAJ-Like; Heat Shock Protein DNAJ-Like Protein; DNAJ-Like Protein; DNAJ-Class Molecular Chaperone
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAED AAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFA AGQAAFEVLKQAEERKSWKPT
Sequences:
>Translated_181_residues MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAED AAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFA AGQAAFEVLKQAEERKSWKPT >Mature_180_residues GSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAEDA AARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAA GQAAFEVLKQAEERKSWKPT
Specific function: Unknown
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20064; Mature: 19933
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCE CCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC SHAAEYNRGWDYFAGLSAEDAAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALE CHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAAGQAAFEVLKQAEERKSWKP HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC T C >Mature Secondary Structure GSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCE CCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC SHAAEYNRGWDYFAGLSAEDAAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALE CHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAAGQAAFEVLKQAEERKSWKP HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC T C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA