Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487233

Identifier: 103487233

GI number: 103487233

Start: 1840669

End: 1841214

Strand: Reverse

Name: 103487233

Synonym: Sala_1748

Alternate gene names: NA

Gene position: 1841214-1840669 (Counterclockwise)

Preceding gene: 103487234

Following gene: 103487226

Centisome position: 55.04

GC content: 68.68

Gene sequence:

>546_bases
ATGGGCTCGATGAGCCGCGCCAAAAGATCCGACGATTGGGGGTTTCCCCGCTGGCGCCCCTATGGCTCGTCGCGCGAGGC
GCGGCAGGTGCGGCTCTGCGATCGGCACGGCTGCGCCGAACCGGGCAACTGCCCCGCGCCCAAATCGCCGAACAGCCCCG
AACGCTGGTATTTCTGCGAAAGCCACGCCGCCGAATATAATCGCGGCTGGGACTATTTCGCCGGGCTGAGCGCCGAGGAT
GCCGCGGCGCGCGCGGCGGAGGAAGCACAGGGCGCCCGCAGCTATGCCCGCGCCCAGCATTATGCCTGGGGCGGCGCGGG
CGACGGCAGCCGCAGCGCCGACGAAATGCGCGCGCTCGAAATCCTGGGCCTCGACCCCGACGCCGATTTCGACGCGACGA
AAAAGGCCTGGCGCGCCTATGCGAAGGAGTGCCACCCCGACGTCAAGCCCGGCGATGCCGACGCGGCGAAGCGCTTTGCC
GCCGGGCAGGCGGCGTTTGAAGTGCTGAAACAGGCCGAAGAACGCAAAAGCTGGAAACCGACCTGA

Upstream 100 bases:

>100_bases
GAAACTTGCGGCCAAGGCGTTCGGTTACAAGCCAATGAATGGGTTCTGACCCTGGGATTTTCGCGCTCCTCGGCTAGCAA
TCGGGCGCCCCAGCCGCTAC

Downstream 100 bases:

>100_bases
GGGGCAGGGAAGCGACCGATTGCAGCCACCAATCCTCCCCTGCGGGGGAGGATCGCAACGTCCGCTCCCCCACCCCAAAA
CTGCCTCGCCGTCAGCCCAA

Product: heat shock protein DnaJ-like protein

Products: NA

Alternate protein names: Heat Shock Protein DNAJ-Like; Heat Shock Protein DNAJ-Like Protein; DNAJ-Like Protein; DNAJ-Class Molecular Chaperone

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAED
AAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFA
AGQAAFEVLKQAEERKSWKPT

Sequences:

>Translated_181_residues
MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAED
AAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFA
AGQAAFEVLKQAEERKSWKPT
>Mature_180_residues
GSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCESHAAEYNRGWDYFAGLSAEDA
AARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALEILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAA
GQAAFEVLKQAEERKSWKPT

Specific function: Unknown

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20064; Mature: 19933

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCE
CCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC
SHAAEYNRGWDYFAGLSAEDAAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALE
CHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAAGQAAFEVLKQAEERKSWKP
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T
C
>Mature Secondary Structure 
GSMSRAKRSDDWGFPRWRPYGSSREARQVRLCDRHGCAEPGNCPAPKSPNSPERWYFCE
CCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC
SHAAEYNRGWDYFAGLSAEDAAARAAEEAQGARSYARAQHYAWGGAGDGSRSADEMRALE
CHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
ILGLDPDADFDATKKAWRAYAKECHPDVKPGDADAAKRFAAGQAAFEVLKQAEERKSWKP
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA