| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487226
Identifier: 103487226
GI number: 103487226
Start: 1834173
End: 1834817
Strand: Reverse
Name: 103487226
Synonym: Sala_1741
Alternate gene names: NA
Gene position: 1834817-1834173 (Counterclockwise)
Preceding gene: 103487233
Following gene: 103487225
Centisome position: 54.85
GC content: 68.06
Gene sequence:
>645_bases ATGTCCGACGACCGCGTCGATTTCGCCTCCATGCTGGCATCGCGCCTGTGCCACGACCTGCTCAGCCCCGTCGGCGCCTT CGCCAACGGGCTCGAACTGCTCGCCGACGAGAAAGATCCCGAAATGCGGGCGCGCTGTATCGAATTGCTCGAACAGAGCG CGCGGACGTCGGCGAACAAGCTCAAATTTTTTCGCCTGGCCTTTGGGTCGGCGGGCGGCTTCGGCGAGCTGGTTCCGCCC GAGGAAGCCAAATCGGCGATCGAGGGGATCATCGGCGACCGTGCGATCACGCTCAACTGGATGATCGGCGCCGACCCGCT GCCCAAGCCTGCGGTCAAGATCATCCTCAACCTCGCGCTGCTGCTCGTCGATGCGCTGGTGCGCGGCGGCCGACTCGACG TCGGATGCGAAAAGCAGGCGGACGGCATCGAGATCGCGCTGCATGTCGAGGCCGAGCGCATCTTCCTCGACGCCGATGTC GAGCGCATCTTGGCCGAGGGCGAGGCGGCGAGCCCGATGACCTCGCGCACCGCGCCCGCCGTGCTGGTGCAGGCGGTGGC GCGGCAGAGCGACGGCACGGTGATGCTGGCGCGCGAAACGCCGACCTCGCTGCTCGTCGGCGCGGTGCTGCGCGCGCGCG GGTAA
Upstream 100 bases:
>100_bases GTAAAGGAAAAAGGAACCAGCTTGCTCTCGCACCCATGCCTGCCGTAGGACCGCCCCACGCCGGAAAATCCGGCGACTGC GCTGGGGAGCCTGTTCATCC
Downstream 100 bases:
>100_bases AGCCACTTTTAACCATTGCCCGCCATGGTGGCGTCTCAAGTTGCTGGGGCGCACCGATACGGCGATGGACGATCTACTGA ACGAGTTTCTGGCCGAGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANKLKFFRLAFGSAGGFGELVPP EEAKSAIEGIIGDRAITLNWMIGADPLPKPAVKIILNLALLLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADV ERILAEGEAASPMTSRTAPAVLVQAVARQSDGTVMLARETPTSLLVGAVLRARG
Sequences:
>Translated_214_residues MSDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANKLKFFRLAFGSAGGFGELVPP EEAKSAIEGIIGDRAITLNWMIGADPLPKPAVKIILNLALLLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADV ERILAEGEAASPMTSRTAPAVLVQAVARQSDGTVMLARETPTSLLVGAVLRARG >Mature_213_residues SDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANKLKFFRLAFGSAGGFGELVPPE EAKSAIEGIIGDRAITLNWMIGADPLPKPAVKIILNLALLLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADVE RILAEGEAASPMTSRTAPAVLVQAVARQSDGTVMLARETPTSLLVGAVLRARG
Specific function: Unknown
COG id: COG5385
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22801; Mature: 22669
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH LKFFRLAFGSAGGFGELVPPEEAKSAIEGIIGDRAITLNWMIGADPLPKPAVKIILNLAL HHHHEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHH LLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADVERILAEGEAASPMTSRTAPA HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHEEEEHHHHHHHHHCCCCCCCCCHHHHHH VLVQAVARQSDGTVMLARETPTSLLVGAVLRARG HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure SDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH LKFFRLAFGSAGGFGELVPPEEAKSAIEGIIGDRAITLNWMIGADPLPKPAVKIILNLAL HHHHEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHH LLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADVERILAEGEAASPMTSRTAPA HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHEEEEHHHHHHHHHCCCCCCCCCHHHHHH VLVQAVARQSDGTVMLARETPTSLLVGAVLRARG HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA