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The map label for this gene is smpB

Identifier: 103487215

GI number: 103487215

Start: 1821322

End: 1821807

Strand: Reverse

Name: smpB

Synonym: Sala_1730

Alternate gene names: 103487215

Gene position: 1821807-1821322 (Counterclockwise)

Preceding gene: 103487216

Following gene: 103487214

Centisome position: 54.46

GC content: 61.32

Gene sequence:

>486_bases
ATGGTCCGTCCGCAGTCTGCCGCAGAGTTCGACAAGAAAAAGGTCGTCGCCGAGAACCGGCGCGCGCGCTTTGACTATGC
CATCGAACAGGTGTTCGAGGCCGGAATCGCGTTGCAGGGGACCGAGGTCAAGTCGCTGCGCTTCGGCGAGGGGACGATCG
CCGAAAGCTATGCCGAAGTGAACGGCGGCGAGGTGTGGCTGATCAACGCCAATATCCCTGAGTTCAGTCATGGCAACCGC
TTCAACCACGAGCCGAAACGACCGCGCAAACTGCTGCTCAACTGGCGCGAGATCAACAAGCTGCACGCAGGCGTGGCCCG
GCAGGGGATGACGCTCGTTCCCTTGAGCGTCTATTTCAACAGCCGCGGCCGCGCGAAGGTCGAACTGGCGCTGGCGAAAG
GCAAGAAGGCGCACGACAAGCGCGAATCGATCAAGGAGCGCGACTGGAAGCGCGACAAGCAAAGATTGCTGAAGGACCGC
GGATGA

Upstream 100 bases:

>100_bases
AAGTCGAGACGCCCATCGGCCGCGCGCGCCCTGGGGGTGTCTCGACTTCGCTCGATGCGAACGGACTAGGTTTGGCATAA
GGTTCATTTCAGGTTTCAAG

Downstream 100 bases:

>100_bases
GCGGGGACACGCCCAAGGAGCCGGGGCTGCGCGAGGAGCCCGGGCTGCGCGAGAACCCCAAGCTGCGCGACAGGGCGGCG
GTGATGAACTGGATCCGCCG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANIPEFSHGNR
FNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDR
G

Sequences:

>Translated_161_residues
MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANIPEFSHGNR
FNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDR
G
>Mature_161_residues
MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANIPEFSHGNR
FNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDR
G

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=146, Percent_Identity=49.3150684931507, Blast_Score=134, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_SPHAL (Q1GSC9)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_616776.1
- ProteinModelPortal:   Q1GSC9
- SMR:   Q1GSC9
- GeneID:   4081192
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_1730
- NMPDR:   fig|317655.9.peg.1662
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   SALA317655:SALA_1730-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18482; Mature: 18482

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEV
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCEEECCCCHHHHHHHHC
NGGEVWLINANIPEFSHGNRFNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFN
CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
SRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDRG
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEV
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCEEECCCCHHHHHHHHC
NGGEVWLINANIPEFSHGNRFNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFN
CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
SRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDRG
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA