| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487204
Identifier: 103487204
GI number: 103487204
Start: 1808694
End: 1809179
Strand: Reverse
Name: 103487204
Synonym: Sala_1719
Alternate gene names: NA
Gene position: 1809179-1808694 (Counterclockwise)
Preceding gene: 103487205
Following gene: 103487201
Centisome position: 54.08
GC content: 66.67
Gene sequence:
>486_bases TTGAAGCCGACGAAAAAGACGCGGCGCACCGATCATGCCGAGCGGCTGATCGCGGCGCCGCTGGTCGATGTGTTTGCGGC CTTTACCAGCGCCGACACGCTGGCGCGCTGGTTACCGCCGGATGGGGCGACGGGGACGTTCGAGCAGGTCGACCTTTGCG CCGGGGGCGGATTTCGCCTGCGGCTGACGTTCGACGACCCGGAGGTCGAGACGAAGAGCGACGACGACGGCGACGTCGTT GACGTGCATATCCCGGTGCTCGACGACGGGCGGCTGATCGTGTGGGAGGTCGCGTTCGAATCGGACGACCCGCGCTTTTC GGGAACGATGGCGATGCACTGGTATCTGTCGCGGCAGGGCGGCGGCACGCTGGTGACGGTCGATGCGCACCATGTGCCGC CGGGGATTTCGGCGAAGGACCATGTGGCGGGGCTGAACTCGTCGCTGGCGAATTTGGCGAGGGTGGTGGAAGGCGCGAGC AGCTAA
Upstream 100 bases:
>100_bases GCGGGCAGGGCGGCGGCGGGCGCCCCGACATGGCGCAGGGCGGCGGCCCGAACGGCGGCGCGGCGAACGATGCCGTTGCA GCGGTGAAGGCCGCGCTCGC
Downstream 100 bases:
>100_bases TAATTCCGTTCGCATCGAGCGAAGTCGAGATGCCCCTCGGTCAGGCGCCACCCCGATGGGTGTCTCGACTTCGCTCGACA CAAACGGAACAGATGGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Aha1 Domain Family Protein; Aha1 Domain-Containing Protein
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MKPTKKTRRTDHAERLIAAPLVDVFAAFTSADTLARWLPPDGATGTFEQVDLCAGGGFRLRLTFDDPEVETKSDDDGDVV DVHIPVLDDGRLIVWEVAFESDDPRFSGTMAMHWYLSRQGGGTLVTVDAHHVPPGISAKDHVAGLNSSLANLARVVEGAS S
Sequences:
>Translated_161_residues MKPTKKTRRTDHAERLIAAPLVDVFAAFTSADTLARWLPPDGATGTFEQVDLCAGGGFRLRLTFDDPEVETKSDDDGDVV DVHIPVLDDGRLIVWEVAFESDDPRFSGTMAMHWYLSRQGGGTLVTVDAHHVPPGISAKDHVAGLNSSLANLARVVEGAS S >Mature_161_residues MKPTKKTRRTDHAERLIAAPLVDVFAAFTSADTLARWLPPDGATGTFEQVDLCAGGGFRLRLTFDDPEVETKSDDDGDVV DVHIPVLDDGRLIVWEVAFESDDPRFSGTMAMHWYLSRQGGGTLVTVDAHHVPPGISAKDHVAGLNSSLANLARVVEGAS S
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17341; Mature: 17341
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTKKTRRTDHAERLIAAPLVDVFAAFTSADTLARWLPPDGATGTFEQVDLCAGGGFRL CCCCCCHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHEEEEECCCCEEE RLTFDDPEVETKSDDDGDVVDVHIPVLDDGRLIVWEVAFESDDPRFSGTMAMHWYLSRQG EEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECC GGTLVTVDAHHVPPGISAKDHVAGLNSSLANLARVVEGASS CCEEEEEECCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MKPTKKTRRTDHAERLIAAPLVDVFAAFTSADTLARWLPPDGATGTFEQVDLCAGGGFRL CCCCCCHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHEEEEECCCCEEE RLTFDDPEVETKSDDDGDVVDVHIPVLDDGRLIVWEVAFESDDPRFSGTMAMHWYLSRQG EEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECC GGTLVTVDAHHVPPGISAKDHVAGLNSSLANLARVVEGASS CCEEEEEECCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA