| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487191
Identifier: 103487191
GI number: 103487191
Start: 1796119
End: 1797180
Strand: Reverse
Name: 103487191
Synonym: Sala_1706
Alternate gene names: NA
Gene position: 1797180-1796119 (Counterclockwise)
Preceding gene: 103487192
Following gene: 103487189
Centisome position: 53.72
GC content: 65.35
Gene sequence:
>1062_bases ATGACCATGGCAATCAATGAAGAGAAGCTGCACGGCTTCGTCGGCAAGATGCTGGGCGATGTCGGCGGCGGGATGAGCGT GCCCACGGTGCGGCTGGGTTTCCGGCTCGGCCTGTTCGACGCGCTCGCGCAGGCGCCGGCGACGGCGGGCGAACTCGCGG CGCGCGCGGGCGGGTTGCACGAACGCTATGTCCGCGAATGGGCGCTCGCGCAGGCGGCGAACGGTTATATCGATTATGAC GCGGCTGCGGAGCGCTTCAGCATCTCGCCCGAACAGGCGATGGTGTTCGTGCACAGGGACAGTCCCGTCTATCTCGCGGG CGCGTTCGAGATTATCGCCGCGATGATCGAGGCGGAAGCGAGAGTTGAGCAATGCTTTCGCAACGGGACGGGCGTGCGCT GGGGTGATCATGCGGGCTGTCTTTTCTGTGCGACGGGCGCCTTTTTTCGGCCGGGTTATGTCAACAATATCGTCCAGGCG TGGATCCCCGCGCTCGATGGCGTCGAGGCGAAGCTGAAAAAAGGCGCGCGCGTCGCCGACGTCGGATGCGGCGTCGGCTT TTCGACGCTGCTGATGGCCGACGCCTATCCCGCAAGCGAATTCGTCGGCTTTGACTTCCACGCGCCGTCGATCGACGAGG CGCGGCGTCACGCCGAAGGGCATGGCTATGGCGACCGGGTGCGGTTCGAAGTCGCGGCGGCGAAGGAAATCGAAGAGGAT GGTTTCGATCTGATCACCATGTACGACTGCCTGCACGATATGGGCGATCCGCGTGGCTGCGCCCGGCATATGCGCCAGAT GCTGGCGTCCGATGGATGCTGGATGATCGTCGAACCGATCGCGGGCGACACGCCCGCGGAGAATATGAACCCGGTCGGGC GGCTCTATTACAATGCGTCGACGATGATCTGCGTGCCGACGTCGCTCGATCAGGAAGTCGGGGAGGGGCTTGGCGCGCAG GCGGGTGAGGCGCGGCTGGCGCAGATCGTCCGCGAGGGCGGTTTCGCCAGCGTGCGGCGCGCGACCGAGGGGCCGTTCAA CATGGTTCTCGAGGCGCGGTGA
Upstream 100 bases:
>100_bases GAGGCGGGCGCGTGCCGTGCCGCCACCACTATGCTATGCTGGGCGCCTCAACGGGAGCTTCTGGCGAGTCGCGCTGTCCT GATCGGCGAGGAGCGGAAGA
Downstream 100 bases:
>100_bases GGCTTCGCGGCGACGGGCCGAAATCTTTGAAGGATCAGATCGGCGACCAGTCGCCGCCCTTTTCCTCTTCGTCGGCATCG GGCCCCGGTTCGGGCTGGCC
Product: methyltransferase type 12
Products: NA
Alternate protein names: Methyltransferase; Transcriptional Regulatory Protein; Transcriptional Regulator; SAM-Dependent Methyltransferase; S-Adenosylmethionine-Dependent Methyltransferase; Methyltransferase Protein; Methyltransferase Domain Family
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTMAINEEKLHGFVGKMLGDVGGGMSVPTVRLGFRLGLFDALAQAPATAGELAARAGGLHERYVREWALAQAANGYIDYD AAAERFSISPEQAMVFVHRDSPVYLAGAFEIIAAMIEAEARVEQCFRNGTGVRWGDHAGCLFCATGAFFRPGYVNNIVQA WIPALDGVEAKLKKGARVADVGCGVGFSTLLMADAYPASEFVGFDFHAPSIDEARRHAEGHGYGDRVRFEVAAAKEIEED GFDLITMYDCLHDMGDPRGCARHMRQMLASDGCWMIVEPIAGDTPAENMNPVGRLYYNASTMICVPTSLDQEVGEGLGAQ AGEARLAQIVREGGFASVRRATEGPFNMVLEAR
Sequences:
>Translated_353_residues MTMAINEEKLHGFVGKMLGDVGGGMSVPTVRLGFRLGLFDALAQAPATAGELAARAGGLHERYVREWALAQAANGYIDYD AAAERFSISPEQAMVFVHRDSPVYLAGAFEIIAAMIEAEARVEQCFRNGTGVRWGDHAGCLFCATGAFFRPGYVNNIVQA WIPALDGVEAKLKKGARVADVGCGVGFSTLLMADAYPASEFVGFDFHAPSIDEARRHAEGHGYGDRVRFEVAAAKEIEED GFDLITMYDCLHDMGDPRGCARHMRQMLASDGCWMIVEPIAGDTPAENMNPVGRLYYNASTMICVPTSLDQEVGEGLGAQ AGEARLAQIVREGGFASVRRATEGPFNMVLEAR >Mature_352_residues TMAINEEKLHGFVGKMLGDVGGGMSVPTVRLGFRLGLFDALAQAPATAGELAARAGGLHERYVREWALAQAANGYIDYDA AAERFSISPEQAMVFVHRDSPVYLAGAFEIIAAMIEAEARVEQCFRNGTGVRWGDHAGCLFCATGAFFRPGYVNNIVQAW IPALDGVEAKLKKGARVADVGCGVGFSTLLMADAYPASEFVGFDFHAPSIDEARRHAEGHGYGDRVRFEVAAAKEIEEDG FDLITMYDCLHDMGDPRGCARHMRQMLASDGCWMIVEPIAGDTPAENMNPVGRLYYNASTMICVPTSLDQEVGEGLGAQA GEARLAQIVREGGFASVRRATEGPFNMVLEAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17562972, Length=325, Percent_Identity=28.6153846153846, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562552, Length=350, Percent_Identity=26.2857142857143, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562982, Length=333, Percent_Identity=25.5255255255255, Blast_Score=101, Evalue=6e-22, Organism=Caenorhabditis elegans, GI193208453, Length=224, Percent_Identity=26.7857142857143, Blast_Score=79, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38056; Mature: 37924
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMAINEEKLHGFVGKMLGDVGGGMSVPTVRLGFRLGLFDALAQAPATAGELAARAGGLH CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCHH ERYVREWALAQAANGYIDYDAAAERFSISPEQAMVFVHRDSPVYLAGAFEIIAAMIEAEA HHHHHHHHHHHHCCCCEECCCHHHHCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHH RVEQCFRNGTGVRWGDHAGCLFCATGAFFRPGYVNNIVQAWIPALDGVEAKLKKGARVAD HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEE VGCGVGFSTLLMADAYPASEFVGFDFHAPSIDEARRHAEGHGYGDRVRFEVAAAKEIEED CCCCCCHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHC GFDLITMYDCLHDMGDPRGCARHMRQMLASDGCWMIVEPIAGDTPAENMNPVGRLYYNAS CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCC TMICVPTSLDQEVGEGLGAQAGEARLAQIVREGGFASVRRATEGPFNMVLEAR EEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEECC >Mature Secondary Structure TMAINEEKLHGFVGKMLGDVGGGMSVPTVRLGFRLGLFDALAQAPATAGELAARAGGLH CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCHH ERYVREWALAQAANGYIDYDAAAERFSISPEQAMVFVHRDSPVYLAGAFEIIAAMIEAEA HHHHHHHHHHHHCCCCEECCCHHHHCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHH RVEQCFRNGTGVRWGDHAGCLFCATGAFFRPGYVNNIVQAWIPALDGVEAKLKKGARVAD HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEE VGCGVGFSTLLMADAYPASEFVGFDFHAPSIDEARRHAEGHGYGDRVRFEVAAAKEIEED CCCCCCHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHC GFDLITMYDCLHDMGDPRGCARHMRQMLASDGCWMIVEPIAGDTPAENMNPVGRLYYNAS CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCC TMICVPTSLDQEVGEGLGAQAGEARLAQIVREGGFASVRRATEGPFNMVLEAR EEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA