| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487167
Identifier: 103487167
GI number: 103487167
Start: 1769047
End: 1770798
Strand: Reverse
Name: 103487167
Synonym: Sala_1682
Alternate gene names: NA
Gene position: 1770798-1769047 (Counterclockwise)
Preceding gene: 103487168
Following gene: 103487166
Centisome position: 52.94
GC content: 74.94
Gene sequence:
>1752_bases TTGCAGGCGCCGAAAGGCAGCGGGCGTGAGCGCCGCCGTGGTCGCCTGCCACGCCTGCGCCGACGCGCGCCGCGCCTCGC TCGGCGCGGCCGCCGCGCCGCGTCGCGCGTTGCTCGCGCTGCCGGGATGTGCCTGCCAGACGCTGCCGCCCGGCGAGCGG CGCAAGCGGCTGCTCGGTCCCGGCGCGGGGCCGCTTGCCGAGCTGTCGACGCGCTATTTCGCCGAGGTCCGGCAATGGGT GGCGGTCGCCAAGGGGTGCGACGTGCGCGCACTGGGCGCCGCCGCCGATGTCGCGCTGGGCCTTGGCACCGGATCGCGGC GCTGCGACGCGGTGGCACGCGCGACCGGCGAGATGCTCGAACGCTATGGCGCCGCGCTCGTGCCGCCGGGTGGCAGCGAG CGCGTCGCGCTCACCGACTGGCGCGGCATCCCGTGCGGCGATGCGCCGGCGGCGGCGGCGTGGCTGCCCTTCCATCGCGA CGGAAGGCCGGTGTTGCCTGCATCCTCGACGGGGCTTGGCTTTGCGTTCGAACGCGCGCGGGCGCTGCGCGCTGCGGCGT ACGAGATGATCGAACGACGAGCGATCGACGCGCTGGCGCGCGGCGCGCAGGCGCAGGCGCTGGGCGCGATGCGCGTCGGC AAGGTCGAAGCATCCGGGTTTCGTCTTGCGGCACCGGTGCCGGTCGCGCTGGTGCTGATCGCCGACGCACGTGGCCGGAT CGTCGCGGCCGGCGCGGCGGCGCGGCCTCGAATCGCCGCGGCGCTGCGCGCGGCGCGGCGCGAGGCGGCGCTTGGCTGGC TGATCGCACAGGGGCGCGTGCTGCCGGGTGCCGGGCTGCACGGCGCGGATCTGTTGGGGCCGCTCGCCGAACTTTCACTT GCCGAATGGCCTGTCGCGGCGCGCGGGGGCGCCGCACCGCCGCCGCGCGGGGTGCTGGCGCGCGGCTTTGCTTTCGCCAA CCTGACGCCGGGCGACATCGCCGCGGCGGGCGGATGGGTGGTGCGCGCGATGGAGAGGATCGCCCCCGATGCTTGAGACC GCGCCATCGCCCGTCGCGGATCGGGCCCGCCTGCTTTGCGGTGGCGATGCGCATGCCGTCGCCCCGCTGCTCGATGCACT GGCGTCGTCGTCGGCGCTTGCCGCGGGCGTGCGTTTGCTGCGCGGTCGCGGCGCGGGGTGGGCAGGGACGCCGCGCGCTC TCGCGATGCGGCTGGCGGCCACCCTGCGGCCGTGGCCCGGCCGCGACGAGATACGCGCGTTCGACAGCCGCGCGGGCACG GTCACCGCGCGCGATCTGGGGAAAGCGATCGTCGATCCGAACCGTGTCGCCGATACGATCGACAGCGACGGCACGGTGGT GTTCCAGAAAATCGACGGCCTCGATTTTCACTGGCACCGGCTGGCGCGCGCGTTTGAGGGCGCGACGCGCCGACCCGCGC AGGTCAACGCCTATGCGGGCGCGCCGGACGCGCCGGGACTCGCGTGGCACCGCGACCCGCACGACGTGCTGGTCCTGCAA CTCGCGGGCACCAAAATCTTTGCGGTCGAGCGGGACGCGGGCGCCATCGACATTCCGCTGGCGCCCGGCGATCTATTGTG GCTGGACCGGGGTGTCCGGCATCGCGCGACGAACGGCTCGGCCGGGTCGATCCATGCCTCGCTTGGCCTGCTCCACTGGA TGCGCGATGCGATGGCGGTGCCGGTCATCGACCGGCGGCCGCTGGCTCCGCCGCTTCCCGCCTGTCCGCTGA
Upstream 100 bases:
>100_bases TGCAAAGGCTGGTGCCCGCACGAAAGCCACATTGCGGCGCGGCGCGGCGCGGCGGGGCGCTGTTGCGGGCTGGCGCCGGT CTTCGATCATTTCGAGACGC
Downstream 100 bases:
>100_bases GCGCCGAAGAACGCGGCGCGGCGCTGCTCGACTGGCGCCCGTTTCGTGACCTGCCCCCCGATGTGGCGGGCGGCGAGCAT CTGCGGCCCGACCTGCTCGC
Product: kinesin K39, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MQAPKGSGRERRRGRLPRLRRRAPRLARRGRRAASRVARAAGMCLPDAAARRAAQAAARSRRGAACRAVDALFRRGPAMG GGRQGVRRARTGRRRRCRAGPWHRIAALRRGGTRDRRDARTLWRRARAAGWQRARRAHRLARHPVRRCAGGGGVAALPSR RKAGVACILDGAWLCVRTRAGAARCGVRDDRTTSDRRAGARRAGAGAGRDARRQGRSIRVSSCGTGAGRAGADRRRTWPD RRGRRGGAASNRRGAARGAARGGAWLADRTGARAAGCRAARRGSVGAARRTFTCRMACRGARGRRTAAARGAGARLCFRQ PDAGRHRRGGRMGGARDGEDRPRCLRPRHRPSRIGPACFAVAMRMPSPRCSMHWRRRRRLPRACVCCAVAARGGQGRRAL SRCGWRPPCGRGPAATRYARSTAARARSPRAIWGKRSSIRTVSPIRSTATARWCSRKSTASIFTGTGWRARLRARRADPR RSTPMRARRTRRDSRGTATRTTCWSCNSRAPKSLRSSGTRAPSTFRWRPAIYCGWTGVSGIARRTARPGRSMPRLACSTG CAMRWRCRSSTGGRWLRRFPPVR
Sequences:
>Translated_583_residues MQAPKGSGRERRRGRLPRLRRRAPRLARRGRRAASRVARAAGMCLPDAAARRAAQAAARSRRGAACRAVDALFRRGPAMG GGRQGVRRARTGRRRRCRAGPWHRIAALRRGGTRDRRDARTLWRRARAAGWQRARRAHRLARHPVRRCAGGGGVAALPSR RKAGVACILDGAWLCVRTRAGAARCGVRDDRTTSDRRAGARRAGAGAGRDARRQGRSIRVSSCGTGAGRAGADRRRTWPD RRGRRGGAASNRRGAARGAARGGAWLADRTGARAAGCRAARRGSVGAARRTFTCRMACRGARGRRTAAARGAGARLCFRQ PDAGRHRRGGRMGGARDGEDRPRCLRPRHRPSRIGPACFAVAMRMPSPRCSMHWRRRRRLPRACVCCAVAARGGQGRRAL SRCGWRPPCGRGPAATRYARSTAARARSPRAIWGKRSSIRTVSPIRSTATARWCSRKSTASIFTGTGWRARLRARRADPR RSTPMRARRTRRDSRGTATRTTCWSCNSRAPKSLRSSGTRAPSTFRWRPAIYCGWTGVSGIARRTARPGRSMPRLACSTG CAMRWRCRSSTGGRWLRRFPPVR >Mature_583_residues MQAPKGSGRERRRGRLPRLRRRAPRLARRGRRAASRVARAAGMCLPDAAARRAAQAAARSRRGAACRAVDALFRRGPAMG GGRQGVRRARTGRRRRCRAGPWHRIAALRRGGTRDRRDARTLWRRARAAGWQRARRAHRLARHPVRRCAGGGGVAALPSR RKAGVACILDGAWLCVRTRAGAARCGVRDDRTTSDRRAGARRAGAGAGRDARRQGRSIRVSSCGTGAGRAGADRRRTWPD RRGRRGGAASNRRGAARGAARGGAWLADRTGARAAGCRAARRGSVGAARRTFTCRMACRGARGRRTAAARGAGARLCFRQ PDAGRHRRGGRMGGARDGEDRPRCLRPRHRPSRIGPACFAVAMRMPSPRCSMHWRRRRRLPRACVCCAVAARGGQGRRAL SRCGWRPPCGRGPAATRYARSTAARARSPRAIWGKRSSIRTVSPIRSTATARWCSRKSTASIFTGTGWRARLRARRADPR RSTPMRARRTRRDSRGTATRTTCWSCNSRAPKSLRSSGTRAPSTFRWRPAIYCGWTGVSGIARRTARPGRSMPRLACSTG CAMRWRCRSSTGGRWLRRFPPVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64139; Mature: 64139
Theoretical pI: Translated: 12.85; Mature: 12.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAPKGSGRERRRGRLPRLRRRAPRLARRGRRAASRVARAAGMCLPDAAARRAAQAAARS CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RRGAACRAVDALFRRGPAMGGGRQGVRRARTGRRRRCRAGPWHRIAALRRGGTRDRRDAR HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHH TLWRRARAAGWQRARRAHRLARHPVRRCAGGGGVAALPSRRKAGVACILDGAWLCVRTRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEECCCEEEEEECC GAARCGVRDDRTTSDRRAGARRAGAGAGRDARRQGRSIRVSSCGTGAGRAGADRRRTWPD CHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCHHCCCCH RRGRRGGAASNRRGAARGAARGGAWLADRTGARAAGCRAARRGSVGAARRTFTCRMACRG HCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC ARGRRTAAARGAGARLCFRQPDAGRHRRGGRMGGARDGEDRPRCLRPRHRPSRIGPACFA CCCCCHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHH VAMRMPSPRCSMHWRRRRRLPRACVCCAVAARGGQGRRALSRCGWRPPCGRGPAATRYAR HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHH STAARARSPRAIWGKRSSIRTVSPIRSTATARWCSRKSTASIFTGTGWRARLRARRADPR HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCCCC RSTPMRARRTRRDSRGTATRTTCWSCNSRAPKSLRSSGTRAPSTFRWRPAIYCGWTGVSG CCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCEEECCEEEECCCCHHH IARRTARPGRSMPRLACSTGCAMRWRCRSSTGGRWLRRFPPVR HHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHCCCCC >Mature Secondary Structure MQAPKGSGRERRRGRLPRLRRRAPRLARRGRRAASRVARAAGMCLPDAAARRAAQAAARS CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RRGAACRAVDALFRRGPAMGGGRQGVRRARTGRRRRCRAGPWHRIAALRRGGTRDRRDAR HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHH TLWRRARAAGWQRARRAHRLARHPVRRCAGGGGVAALPSRRKAGVACILDGAWLCVRTRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEECCCEEEEEECC GAARCGVRDDRTTSDRRAGARRAGAGAGRDARRQGRSIRVSSCGTGAGRAGADRRRTWPD CHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCHHCCCCH RRGRRGGAASNRRGAARGAARGGAWLADRTGARAAGCRAARRGSVGAARRTFTCRMACRG HCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC ARGRRTAAARGAGARLCFRQPDAGRHRRGGRMGGARDGEDRPRCLRPRHRPSRIGPACFA CCCCCHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHH VAMRMPSPRCSMHWRRRRRLPRACVCCAVAARGGQGRRALSRCGWRPPCGRGPAATRYAR HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHH STAARARSPRAIWGKRSSIRTVSPIRSTATARWCSRKSTASIFTGTGWRARLRARRADPR HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCCCC RSTPMRARRTRRDSRGTATRTTCWSCNSRAPKSLRSSGTRAPSTFRWRPAIYCGWTGVSG CCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCEEECCEEEECCCCHHH IARRTARPGRSMPRLACSTGCAMRWRCRSSTGGRWLRRFPPVR HHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA