| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is atsB [H]
Identifier: 103487168
GI number: 103487168
Start: 1770770
End: 1772152
Strand: Reverse
Name: atsB [H]
Synonym: Sala_1683
Alternate gene names: 103487168
Gene position: 1772152-1770770 (Counterclockwise)
Preceding gene: 103487169
Following gene: 103487167
Centisome position: 52.98
GC content: 71.01
Gene sequence:
>1383_bases GTGCCGCTGGAAGCCGCGCCGACGGACGGGCTGCCCGCCGATGTGCGGCAGGCCCTGCGCGCAAAGCCCGCCTTGCGTCC GGCGGGATGCGACGGCGCGGCGGCGCTTGCGGCGCTGGGGGAGACGCAGCGGCGCCTGCGCACGCGGCTGGCGTCCGCCG AGGCGCGGGCGTTCGATCAGCTGATCCACCTCGGCGCGGCACCCGCCAGCGGACTGGCGATGGTTCCCGCAGCGGCGCTC GGCTTGACCGACCCGGCCTTTGCGGCGGCCGAACCAGCCGATCGCGCCGCGCCGCCGACCGGTCTCGGCAGTCTGGTGCT GATCGCGAAGCTGACGCGCCATTGCAATTTGCGCTGCACCTATTGCACCGACTGGCGCGAAGGGCCGGGCAACCGGATGA CCGCCGCGACGCAGGCGTTGATGGTGCGCCGTGTCGCCGAAGACCGGTCGGTCGCGACGGCGCGCTTCATTTGGCACGGC GGCGAACCGAGTCTGCTCGGTGTGCGCAGGATGCTGGGCTTTCTGTGGTTGCAGGCGCGGCTGCGGCGACCGGGGCAGGA TTTTACCAATTCGATCCAGACCAATGCCGCCGCGCTGCCCGACCCGGTGGTCGCGCTGTGGCGGCTGTTCGATTTCAAGG TCAGTGTCAGCCTCGACGGCCCGCGCGCCATCCACGACCGCCAGCGGCGCACGGCACGCGGCAGCGCGTCGTTCGATGCG GTGATCGACGGGATCGCCCGGCTGCGCGAGGCGGGGGTGTTCGCCGGCGTGCTGATCGTCGTGACACCGGAGGTTGCCGC CTGCCCGGTCGAGAAGCTGGTCGGCGAGTTGGTCGACGCGGGCATCCATGCAGCAGGGTTCCTGCCAGTGCGGCCCGATG CGGGTACGGGCGAGGGACCCTATCTGCCGCCCGCCGCCTTCGCCGATTTCCTGATCCGCCTGTTCGACCTGCTCCGCACG CGCCCCGACCTGCGTTTCGATGTCCGCGAGATCGACGCGCTGCACGCCGCGTGGCAGCGGCAGGCGACGGGTTTCTGCGA ACTCAATGGTCCCTGCCTTGGCGGTTATTTCGGGATCGAGCCCGACGGCACGGTGCGCCACTGCGACAAGTTTCTGGGGT CGGCGGACCACGCGCTCGGCAATCTGGCCGAACGCAGCTTCGCCGACATCCGTGCAAGCGCGGAGATGACCGCGCTGAAG CAGCGCGAGGCGGAACGCTGGCTGCGGCTGCGGACGTGCCGCTGGTACGGCCATTGCAAAGGCTGGTGCCCGCACGAAAG CCACATTGCGGCGCGGCGCGGCGCGGCGGGGCGCTGTTGCGGGCTGGCGCCGGTCTTCGATCATTTCGAGACGCTTGCAG GCGCCGAAAGGCAGCGGGCGTGA
Upstream 100 bases:
>100_bases ACGGCTGGCGACCACGCTGCGGCCGGAGGAGGATGCCGTCGCGGTGCTGCTGCTAACGCGCGCGCGCGCGCTTCTGTCCT TGCTGCGAACCGGCGCGTCG
Downstream 100 bases:
>100_bases GCGCCGCCGTGGTCGCCTGCCACGCCTGCGCCGACGCGCGCCGCGCCTCGCTCGGCGCGGCCGCCGCGCCGCGTCGCGCG TTGCTCGCGCTGCCGGGATG
Product: radical SAM family protein
Products: NA
Alternate protein names: AnSME; Arylsulfatase-activating protein; Ser-type sulfatase-activating enzyme [H]
Number of amino acids: Translated: 460; Mature: 459
Protein sequence:
>460_residues MPLEAAPTDGLPADVRQALRAKPALRPAGCDGAAALAALGETQRRLRTRLASAEARAFDQLIHLGAAPASGLAMVPAAAL GLTDPAFAAAEPADRAAPPTGLGSLVLIAKLTRHCNLRCTYCTDWREGPGNRMTAATQALMVRRVAEDRSVATARFIWHG GEPSLLGVRRMLGFLWLQARLRRPGQDFTNSIQTNAAALPDPVVALWRLFDFKVSVSLDGPRAIHDRQRRTARGSASFDA VIDGIARLREAGVFAGVLIVVTPEVAACPVEKLVGELVDAGIHAAGFLPVRPDAGTGEGPYLPPAAFADFLIRLFDLLRT RPDLRFDVREIDALHAAWQRQATGFCELNGPCLGGYFGIEPDGTVRHCDKFLGSADHALGNLAERSFADIRASAEMTALK QREAERWLRLRTCRWYGHCKGWCPHESHIAARRGAAGRCCGLAPVFDHFETLAGAERQRA
Sequences:
>Translated_460_residues MPLEAAPTDGLPADVRQALRAKPALRPAGCDGAAALAALGETQRRLRTRLASAEARAFDQLIHLGAAPASGLAMVPAAAL GLTDPAFAAAEPADRAAPPTGLGSLVLIAKLTRHCNLRCTYCTDWREGPGNRMTAATQALMVRRVAEDRSVATARFIWHG GEPSLLGVRRMLGFLWLQARLRRPGQDFTNSIQTNAAALPDPVVALWRLFDFKVSVSLDGPRAIHDRQRRTARGSASFDA VIDGIARLREAGVFAGVLIVVTPEVAACPVEKLVGELVDAGIHAAGFLPVRPDAGTGEGPYLPPAAFADFLIRLFDLLRT RPDLRFDVREIDALHAAWQRQATGFCELNGPCLGGYFGIEPDGTVRHCDKFLGSADHALGNLAERSFADIRASAEMTALK QREAERWLRLRTCRWYGHCKGWCPHESHIAARRGAAGRCCGLAPVFDHFETLAGAERQRA >Mature_459_residues PLEAAPTDGLPADVRQALRAKPALRPAGCDGAAALAALGETQRRLRTRLASAEARAFDQLIHLGAAPASGLAMVPAAALG LTDPAFAAAEPADRAAPPTGLGSLVLIAKLTRHCNLRCTYCTDWREGPGNRMTAATQALMVRRVAEDRSVATARFIWHGG EPSLLGVRRMLGFLWLQARLRRPGQDFTNSIQTNAAALPDPVVALWRLFDFKVSVSLDGPRAIHDRQRRTARGSASFDAV IDGIARLREAGVFAGVLIVVTPEVAACPVEKLVGELVDAGIHAAGFLPVRPDAGTGEGPYLPPAAFADFLIRLFDLLRTR PDLRFDVREIDALHAAWQRQATGFCELNGPCLGGYFGIEPDGTVRHCDKFLGSADHALGNLAERSFADIRASAEMTALKQ REAERWLRLRTCRWYGHCKGWCPHESHIAARRGAAGRCCGLAPVFDHFETLAGAERQRA
Specific function: Involved in 'Ser-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of serine ('Ser-72' in the arylsulfatase AtsA) into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemica
COG id: COG0641
COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]
Homologues:
Organism=Escherichia coli, GI48994973, Length=365, Percent_Identity=27.6712328767123, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI87081923, Length=355, Percent_Identity=23.943661971831, Blast_Score=99, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006638 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 49632; Mature: 49501
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: PS01305 MOAA_NIFB_PQQE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLEAAPTDGLPADVRQALRAKPALRPAGCDGAAALAALGETQRRLRTRLASAEARAFDQ CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIHLGAAPASGLAMVPAAALGLTDPAFAAAEPADRAAPPTGLGSLVLIAKLTRHCNLRCT HHHHCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE YCTDWREGPGNRMTAATQALMVRRVAEDRSVATARFIWHGGEPSLLGVRRMLGFLWLQAR EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH LRRPGQDFTNSIQTNAAALPDPVVALWRLFDFKVSVSLDGPRAIHDRQRRTARGSASFDA HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCHHHH VIDGIARLREAGVFAGVLIVVTPEVAACPVEKLVGELVDAGIHAAGFLPVRPDAGTGEGP HHHHHHHHHHHHHHHCEEEEECCCHHHCCHHHHHHHHHHCCCHHCCCEEECCCCCCCCCC YLPPAAFADFLIRLFDLLRTRPDLRFDVREIDALHAAWQRQATGFCELNGPCLGGYFGIE CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCC PDGTVRHCDKFLGSADHALGNLAERSFADIRASAEMTALKQREAERWLRLRTCRWYGHCK CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWCPHESHIAARRGAAGRCCGLAPVFDHFETLAGAERQRA CCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHCCC >Mature Secondary Structure PLEAAPTDGLPADVRQALRAKPALRPAGCDGAAALAALGETQRRLRTRLASAEARAFDQ CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIHLGAAPASGLAMVPAAALGLTDPAFAAAEPADRAAPPTGLGSLVLIAKLTRHCNLRCT HHHHCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE YCTDWREGPGNRMTAATQALMVRRVAEDRSVATARFIWHGGEPSLLGVRRMLGFLWLQAR EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH LRRPGQDFTNSIQTNAAALPDPVVALWRLFDFKVSVSLDGPRAIHDRQRRTARGSASFDA HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCHHHH VIDGIARLREAGVFAGVLIVVTPEVAACPVEKLVGELVDAGIHAAGFLPVRPDAGTGEGP HHHHHHHHHHHHHHHCEEEEECCCHHHCCHHHHHHHHHHCCCHHCCCEEECCCCCCCCCC YLPPAAFADFLIRLFDLLRTRPDLRFDVREIDALHAAWQRQATGFCELNGPCLGGYFGIE CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCC PDGTVRHCDKFLGSADHALGNLAERSFADIRASAEMTALKQREAERWLRLRTCRWYGHCK CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWCPHESHIAARRGAAGRCCGLAPVFDHFETLAGAERQRA CCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2180918 [H]