| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fixG [H]
Identifier: 103487157
GI number: 103487157
Start: 1760195
End: 1761652
Strand: Reverse
Name: fixG [H]
Synonym: Sala_1672
Alternate gene names: 103487157
Gene position: 1761652-1760195 (Counterclockwise)
Preceding gene: 103487158
Following gene: 103487156
Centisome position: 52.66
GC content: 66.46
Gene sequence:
>1458_bases ATGGCCAGCGCTGAAGATCTGTCCGGCGCTCGCGCACCACTTTATGCGGCGCGGCGGGGCGTTTACCCGAAAGCGGTGAG CGGTCCCTTCCGCCGCTTCAAATGGGCGATCATGGGGGTCACGCTGGCGATCTATTACGGCACGCCGTGGATGCGCTGGG ACCGCGGGCCCTATGCCCCCGACCAGGCGGTGCTCGTCGACCTCGCCAACCGGCGCTTCTATATGTTCCAGATCGAAATC TGGCCGCACGAGTTTTATTATGTCGCGGGCCTGCTGATCATGGCGGGGATCGGATTGTTCCTCGTCACCAGCGCGGTCGG GCGCGCCTGGTGCGGCTATGCCTGCCCGCAGACGGTGTGGACCGACCTGTTCCAGCATGTCGACCGGCTGGTCGACGGCG ACCGCAATGCGCAAGTCCGCCTGGCCAATGGTCCATGGAGCTTTGAAAAGATTTCAAAGCGGACGATCAAATATCTGATC TATCTGACCATCGCTTTCTGGACCGGCGGCGCGTGGATCATGTATTTCGCCGACGCGCCGACGCTGACCCATGATTTCTG GACGGGGCAGGCGGCGCCGATCGCCTATGGAACGGTCGCGGTTCTGACCGCGACCACCTTCATCCTCGGGGGCTTCCTGC GCGAGCAGGTGTGCATCTATATGTGCCCCTGGCCGCGCATCCAGACCGCGATGATGGACGAAAAATCGCTGCTGGTGACG TACAAGGACTGGCGCGGCGAACCGCGGGGCAGCGTCAAGAAGGCGATGGCGCATCCCGGTGCGTTCGGCGACTGCATCGA CTGCAACCAGTGCGTCGCGGTGTGCCCGACCGGCATAGACATCCGCGAAGGGCCGCAGATCGGCTGCATCACCTGTGCGC TGTGCATCGACGCGTGCGACGGCGTGATGGCGCAGGTCGGGCGGCCGCGCGGGCTGATCGACTATTGCACGCTCGACGAT GCCGCGGCCGAAAAGGCGGGCGGGCAGGCGCGGCCGGCGTTGCGGACACTGCTCCGCCCCCGCACGCTGATCTACCTCGG CGTATGGAGCGCGATCGGTGCGGCGATGCTCTTTTCGCTGGGGCAGCGCACGCGGCTCGACCTCGCCGTCCAGCATGAGC GCAGCCCGCTCCATGTCCAGCTTTCGGATGGGCATGTCCGCAACAACTACACGCTGAAGCTGCGCAACATGGAAACGCGA CCACGCCGGGTCGCGGTGTCGGTGAGCGGGCTGGCCGACGCGGTGCTGTGGACCGAAGGCGGCACGCGCGAGGGCGCCGG CCGCACCGTTTCGCTGACCCTCGCCCCCGACAGCGTGACGCGGGTGCGGTTGTTCATCGCGGCGCCCGGCACCGGCCCGG CCCGGCAGGATTTCACGATCAGCACGCGCGGCCTCGACGGCGATCCGCGCGGCGACAGCGACATCATCCAGTTCGACCGT CCGGGGAGTGGACAATGA
Upstream 100 bases:
>100_bases CGGATCGACCCGGTGACGATCAAGATGCTGTCCGCCTATGTCTATTCGCTCGGTGGCGGCGAAAAGGGGCTTGTTCCTGC CACCGGCGGGCAGGGAACCG
Downstream 100 bases:
>100_bases CTGAAAAACGGGCCCGCAAGCCGTTCACCGGCTGGCATATGACGGCCATTCTTGTGGCTTTCTTTGCCACCGTCGTCGCG GTCAATTTCACGATGGCGCG
Product: 4Fe-4S ferredoxin, iron-sulfur binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MASAEDLSGARAPLYAARRGVYPKAVSGPFRRFKWAIMGVTLAIYYGTPWMRWDRGPYAPDQAVLVDLANRRFYMFQIEI WPHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVWTDLFQHVDRLVDGDRNAQVRLANGPWSFEKISKRTIKYLI YLTIAFWTGGAWIMYFADAPTLTHDFWTGQAAPIAYGTVAVLTATTFILGGFLREQVCIYMCPWPRIQTAMMDEKSLLVT YKDWRGEPRGSVKKAMAHPGAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACDGVMAQVGRPRGLIDYCTLDD AAAEKAGGQARPALRTLLRPRTLIYLGVWSAIGAAMLFSLGQRTRLDLAVQHERSPLHVQLSDGHVRNNYTLKLRNMETR PRRVAVSVSGLADAVLWTEGGTREGAGRTVSLTLAPDSVTRVRLFIAAPGTGPARQDFTISTRGLDGDPRGDSDIIQFDR PGSGQ
Sequences:
>Translated_485_residues MASAEDLSGARAPLYAARRGVYPKAVSGPFRRFKWAIMGVTLAIYYGTPWMRWDRGPYAPDQAVLVDLANRRFYMFQIEI WPHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVWTDLFQHVDRLVDGDRNAQVRLANGPWSFEKISKRTIKYLI YLTIAFWTGGAWIMYFADAPTLTHDFWTGQAAPIAYGTVAVLTATTFILGGFLREQVCIYMCPWPRIQTAMMDEKSLLVT YKDWRGEPRGSVKKAMAHPGAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACDGVMAQVGRPRGLIDYCTLDD AAAEKAGGQARPALRTLLRPRTLIYLGVWSAIGAAMLFSLGQRTRLDLAVQHERSPLHVQLSDGHVRNNYTLKLRNMETR PRRVAVSVSGLADAVLWTEGGTREGAGRTVSLTLAPDSVTRVRLFIAAPGTGPARQDFTISTRGLDGDPRGDSDIIQFDR PGSGQ >Mature_484_residues ASAEDLSGARAPLYAARRGVYPKAVSGPFRRFKWAIMGVTLAIYYGTPWMRWDRGPYAPDQAVLVDLANRRFYMFQIEIW PHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVWTDLFQHVDRLVDGDRNAQVRLANGPWSFEKISKRTIKYLIY LTIAFWTGGAWIMYFADAPTLTHDFWTGQAAPIAYGTVAVLTATTFILGGFLREQVCIYMCPWPRIQTAMMDEKSLLVTY KDWRGEPRGSVKKAMAHPGAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACDGVMAQVGRPRGLIDYCTLDDA AAEKAGGQARPALRTLLRPRTLIYLGVWSAIGAAMLFSLGQRTRLDLAVQHERSPLHVQLSDGHVRNNYTLKLRNMETRP RRVAVSVSGLADAVLWTEGGTREGAGRTVSLTLAPDSVTRVRLFIAAPGTGPARQDFTISTRGLDGDPRGDSDIIQFDRP GSGQ
Specific function: FixG is predicted to be involved in a redox process. The four proteins fixG, fixH, fixI, and fixS may participate in a membrane-bound complex coupling the fixI cation pump with a redox process catalyzed by fixG [H]
COG id: COG0348
COG function: function code C; Polyferredoxin
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR014116 - InterPro: IPR012285 - InterPro: IPR013783 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53494; Mature: 53363
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAEDLSGARAPLYAARRGVYPKAVSGPFRRFKWAIMGVTLAIYYGTPWMRWDRGPYAP CCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCEEECCCCCCC DQAVLVDLANRRFYMFQIEIWPHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVW CCEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH TDLFQHVDRLVDGDRNAQVRLANGPWSFEKISKRTIKYLIYLTIAFWTGGAWIMYFADAP HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCC TLTHDFWTGQAAPIAYGTVAVLTATTFILGGFLREQVCIYMCPWPRIQTAMMDEKSLLVT CCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCEEEEE YKDWRGEPRGSVKKAMAHPGAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACD ECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH GVMAQVGRPRGLIDYCTLDDAAAEKAGGQARPALRTLLRPRTLIYLGVWSAIGAAMLFSL HHHHHCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHCCCEEEEEEHHHHHHHHHHHHC GQRTRLDLAVQHERSPLHVQLSDGHVRNNYTLKLRNMETRPRRVAVSVSGLADAVLWTEG CCCCEEEEEEECCCCCEEEEECCCEEECCEEEEEECCCCCCCEEEEEECCCCEEEEECCC GTREGAGRTVSLTLAPDSVTRVRLFIAAPGTGPARQDFTISTRGLDGDPRGDSDIIQFDR CCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEECC PGSGQ CCCCC >Mature Secondary Structure ASAEDLSGARAPLYAARRGVYPKAVSGPFRRFKWAIMGVTLAIYYGTPWMRWDRGPYAP CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCEEECCCCCCC DQAVLVDLANRRFYMFQIEIWPHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVW CCEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH TDLFQHVDRLVDGDRNAQVRLANGPWSFEKISKRTIKYLIYLTIAFWTGGAWIMYFADAP HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCC TLTHDFWTGQAAPIAYGTVAVLTATTFILGGFLREQVCIYMCPWPRIQTAMMDEKSLLVT CCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCEEEEE YKDWRGEPRGSVKKAMAHPGAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACD ECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH GVMAQVGRPRGLIDYCTLDDAAAEKAGGQARPALRTLLRPRTLIYLGVWSAIGAAMLFSL HHHHHCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHCCCEEEEEEHHHHHHHHHHHHC GQRTRLDLAVQHERSPLHVQLSDGHVRNNYTLKLRNMETRPRRVAVSVSGLADAVLWTEG CCCCEEEEEEECCCCCEEEEECCCEEECCEEEEEECCCCCCCEEEEEECCCCEEEEECCC GTREGAGRTVSLTLAPDSVTRVRLFIAAPGTGPARQDFTISTRGLDGDPRGDSDIIQFDR CCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEECC PGSGQ CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2536685; 11481432 [H]