Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 103487139

GI number: 103487139

Start: 1739233

End: 1740429

Strand: Reverse

Name: yciR [C]

Synonym: Sala_1654

Alternate gene names: 103487139

Gene position: 1740429-1739233 (Counterclockwise)

Preceding gene: 103487142

Following gene: 103487136

Centisome position: 52.03

GC content: 67.84

Gene sequence:

>1197_bases
ATGAATCGCTTGTCCGAATCCCTGACCGCCTGCGCCCGGAAAATCGAAAGCCAGCACCTTCGTCACGACCGGGACGCCGG
AGTCATTCTGGTGCAGGTCGACCAGATGGCGCGGATCAACAACAGCGCCGGGACCGCCGCGGGCGACGCGGTGCTCGACG
AGATCGGCCGGCGGCTCGAAAATTTTGCCGGCGACGAGTTCGGACCCGGTTCGTGCGTTGAGCGTCTCGACGGGCCGCGC
TTTCTGATCGTGCCCGCCACGCCGCTCGCGCTCGGCGCGCTGCGGGCGCAGGAGCGCGCGCTGCACGTCGCGCTCGCCGA
ACCGATCGTCGGCGATCCGAACGGCCGTCTGTCGATCCGTATCGCCACCGCGCTGATCACGCGCGACGAATCAGTCGCCG
AACAATTGCTTCAGGCGTGCGACCAGCTTGCGCGGCCGGCGTCGGCGCGCGACGGGGCGATGGTCCACGCGGCGCTGTCG
CGCGATGAGGTTGTGATCCATTACCAGCCGCAATATGACGTCGTGACCGGCGCGATGACCGGGGTGGAGGCATTGCTCCG
CTGGCAGCATCCCGAACTTGGTCTGCTTGGTGCCGGGCCGCTGGTGACCGCCGCGCGCGCAGCGCGGCTCGAATGCGAAC
TGACCGAACATGCGCACCGCGTCGCGCTCGCCGAAATGGCGGGCTGGCCGCGGCAACTTGCGCAGCTGCGCGTGTCGCTC
AACATCACCGCCGCCGACCTTGGCGACCCCGAATTCGCCGAACGCTTTGCCGCGATGGTGAGGGCGGCAAAGGTCGATCC
TGACCGGCTGACGCTCGAACTCACCGAACAGGCGATGTTGAGCGACCCCGCGAGCGCGGCGGAGCACCTCGCGCAGATTC
GCGCGCTGGGCTGCGCGATTGCGATCGACGATTTCGGAACCGGCTATTCCAGCCTGTCGCTGCTGGCGCGGCTGCCGATC
GATTATCTGAAGATCGACAGCGGCTTTACCCGCACGATCGACGGCAGCGACCGCGACCGCATCGTCGTGCGCGCGATCGT
TGACCTCGCGCGCGCGCTGGGGCTGCTGGTGGTGGCCGAGGGGATCGAGAACGAACGTCAGCTCGCGCGGCTTGGCGAGA
TCGGGGTGGCGACGTGGCAGGGGTTTTTGAAGTCAGGTCCGGTGCCGGGCGATCAGTTGCCGGGGTTGTTGGGCTAG

Upstream 100 bases:

>100_bases
GGCGCCGCCGGGGCGGCAGGCTGGGATAATGTGACCATCACGTGCGTCTTGTGATGCAAAAGGCAAGCGTTTGGCAAGCA
AAGCCTGCTAGGCAGCGCCA

Downstream 100 bases:

>100_bases
CTATCGTCATCGCGAGGAGTGTAGCGACGAAGCAATCTCCAGCTATCGGCCTGGCGCGAACCGATAGCTGGAGATTGCTT
CGCTCCGCTCGCAATGACCA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLENFAGDEFGPGSCVERLDGPR
FLIVPATPLALGALRAQERALHVALAEPIVGDPNGRLSIRIATALITRDESVAEQLLQACDQLARPASARDGAMVHAALS
RDEVVIHYQPQYDVVTGAMTGVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAHRVALAEMAGWPRQLAQLRVSL
NITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQAMLSDPASAAEHLAQIRALGCAIAIDDFGTGYSSLSLLARLPI
DYLKIDSGFTRTIDGSDRDRIVVRAIVDLARALGLLVVAEGIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLLG

Sequences:

>Translated_398_residues
MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLENFAGDEFGPGSCVERLDGPR
FLIVPATPLALGALRAQERALHVALAEPIVGDPNGRLSIRIATALITRDESVAEQLLQACDQLARPASARDGAMVHAALS
RDEVVIHYQPQYDVVTGAMTGVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAHRVALAEMAGWPRQLAQLRVSL
NITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQAMLSDPASAAEHLAQIRALGCAIAIDDFGTGYSSLSLLARLPI
DYLKIDSGFTRTIDGSDRDRIVVRAIVDLARALGLLVVAEGIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLLG
>Mature_398_residues
MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLENFAGDEFGPGSCVERLDGPR
FLIVPATPLALGALRAQERALHVALAEPIVGDPNGRLSIRIATALITRDESVAEQLLQACDQLARPASARDGAMVHAALS
RDEVVIHYQPQYDVVTGAMTGVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAHRVALAEMAGWPRQLAQLRVSL
NITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQAMLSDPASAAEHLAQIRALGCAIAIDDFGTGYSSLSLLARLPI
DYLKIDSGFTRTIDGSDRDRIVVRAIVDLARALGLLVVAEGIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLLG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=387, Percent_Identity=29.4573643410853, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081921, Length=399, Percent_Identity=27.3182957393484, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=33.4745762711864, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=33.0612244897959, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787055, Length=295, Percent_Identity=29.8305084745763, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=30.5785123966942, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=30.1724137931034, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=30.2521008403361, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI226510982, Length=241, Percent_Identity=34.4398340248963, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082096, Length=153, Percent_Identity=37.9084967320261, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=153, Percent_Identity=34.640522875817, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=28.6885245901639, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787410, Length=161, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 42627; Mature: 42627

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHH
NFAGDEFGPGSCVERLDGPRFLIVPATPLALGALRAQERALHVALAEPIVGDPNGRLSIR
HHCCCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEE
IATALITRDESVAEQLLQACDQLARPASARDGAMVHAALSRDEVVIHYQPQYDVVTGAMT
EEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHH
GVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAHRVALAEMAGWPRQLAQLRVSL
HHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEHEE
NITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQAMLSDPASAAEHLAQIRALGCAI
EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHEE
AIDDFGTGYSSLSLLARLPIDYLKIDSGFTRTIDGSDRDRIVVRAIVDLARALGLLVVAE
EECCCCCCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLLG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHH
NFAGDEFGPGSCVERLDGPRFLIVPATPLALGALRAQERALHVALAEPIVGDPNGRLSIR
HHCCCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEE
IATALITRDESVAEQLLQACDQLARPASARDGAMVHAALSRDEVVIHYQPQYDVVTGAMT
EEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHH
GVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAHRVALAEMAGWPRQLAQLRVSL
HHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEHEE
NITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQAMLSDPASAAEHLAQIRALGCAI
EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHEE
AIDDFGTGYSSLSLLARLPIDYLKIDSGFTRTIDGSDRDRIVVRAIVDLARALGLLVVAE
EECCCCCCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLLG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]