| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487090
Identifier: 103487090
GI number: 103487090
Start: 1681887
End: 1683209
Strand: Direct
Name: 103487090
Synonym: Sala_1605
Alternate gene names: NA
Gene position: 1681887-1683209 (Clockwise)
Preceding gene: 103487088
Following gene: 103487092
Centisome position: 50.28
GC content: 69.01
Gene sequence:
>1323_bases ATGGCGACAGCATCGCACTCCATCCCCTCCGACCGCATGGCGGTGCTCTTCGCGGTGATGCTCGTCGCGGCGGCAGGCAA CACCGCCATGCAGTCGATCCTTCCGGCTATCGGCGCCAAACTGCGCATCCCCGACGTGTGGGTCAGTCTGGCCTTCAGCT GGTCGGCGCTGCTCTGGGTGCTCACCGCGCCGCACTGGGCGCGCCAGTCGGACAAGCGCGGGCGCAAGGCGCTGATGGCG CTGGGGGTGATCGGTTTCCTGTCGTCGATGGCGCTGTGCGGTCTCGTCCTGTGGTCGGGGCTGCAGGGCTGGTTCGCGGC GGGCATGACCTTCGTCCTTTTCGCGCTCTTCCGCAGCCTTTATGGCGGGCTGGGTTCTGCCGCGCCGCCCGCGGTGCAGG CCTATGTCGCCGCGCGCACCGACCCCGACCAGCGGACGCAGGCGCTGTCGCTCGTCTCCTCCTCCTTCGGGCTCGGCACG GTGATCGGTCCCGCGATCGCGCCCTTCTTCATCCTTCCCGTCGTCGGCCTCGCCGGGCCACTGCTCGTCTTCGCTCTCAT CGGGCTTGCCGTGCTCATCGCGCTGCGCTGGCGCCTTCCCAACGACGTGCCGCGCTTTGCCGCGCGCGGTTCGATCATGT CCTATCCCACCACCGGCGCGTCGTCGCAGGCCGCCACGGACGAAGATGACGAACAAACCTCCGATCGGAGCGCTTCCGAA CCGCAGCCGCTGCGCTGGACCGACACGCGCGTGCGCCCTTGGCTTTTTGCCGGGTTCCTCGGCGGACAGGCGCAGGCGAT GATGCTCGGCGTGATCGGTTTTTTGATCCTCGACCGGCTGAACCTGCGGCTGCGTCCCGACGAGGGCGCGGCGATGACCG GCATCGTGCTGATGGCGGGCGCCTTTGCGACCCTGCTCTCGCAATGGGGACTGATCCCGCTCCTCAAAATGTCGCCGCGC ACCGCGGTGCTCGGCGGCGCGGCGCTCGGCGGCGCGGGGACGCTCCTCACCGGCCTGTCTTACGACTTTCACGGTATCGT CATCGGTTTCGCCCTCGCCTCGCTCGGCTTCGGCCTGTTCCGTCCGGGGTTCACCGCCGGCGCCTCGCTCGCCGTGCCGC GCCGCGACCAGGGCGGGGTCGCGGGGATGACCGCGTCGATCAACGGATCGGCCTATATCGTCTCCCCCGCGATCGGCGTC CTCGTTTATAACTGGCACCCCATCGTGGCCTACGGCCTGATGGCGGGATTCTGCGGCTGGCTCGTGCTCTGGGGCTGGGC GGCGCTGCGGCTGGACCAGCCTGTTAGGGACAGGACCCATTAA
Upstream 100 bases:
>100_bases AGGGGCGTCGCGCAAGGAAAGAGTCTGTCTTGACTCTGGACAGCCCGACGACGGTGTGTAGGGAGGGCGCACGGCTGACG GAGAGCAAAGAGGGGCGGAC
Downstream 100 bases:
>100_bases TAGCGAACCACATCAGTAAATACCTTGTCATCCCGGCGAAGGCCGGGACGACATGCGCATTCAGTCGCGCGGCTCATCAT GCTTCTGGTCGCGGACCGGT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; DrugH+ Antiporter-1 Family Protein; Facilitator Superfamily Transporter; Multidrug-Efflux Transporter; Multidrug Resistance Protein; Permease Of Facilitator Superfamily; Facilitator Family Transporter; MFS Superfamily Transporter
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMA LGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGT VIGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPR TAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGV LVYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH
Sequences:
>Translated_440_residues MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMA LGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGT VIGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPR TAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGV LVYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH >Mature_439_residues ATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWVLTAPHWARQSDKRGRKALMAL GVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSLYGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTV IGPAIAPFFILPVVGLAGPLLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASEP QPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAGAFATLLSQWGLIPLLKMSPRT AVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLFRPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVL VYNWHPIVAYGLMAGFCGWLVLWGWAALRLDQPVRDRTH
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46368; Mature: 46237
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWV CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHH LTAPHWARQSDKRGRKALMALGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTVIGPAIAPFFILPVVGLAGP HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCC PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAG CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH AFATLLSQWGLIPLLKMSPRTAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLF HHHHHHHHCCCCEEEECCCCHHEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH RPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVLVYNWHPIVAYGLMAGFCGW CCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHH LVLWGWAALRLDQPVRDRTH HHHHHHHHHHCCCCHHCCCC >Mature Secondary Structure ATASHSIPSDRMAVLFAVMLVAAAGNTAMQSILPAIGAKLRIPDVWVSLAFSWSALLWV CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHH LTAPHWARQSDKRGRKALMALGVIGFLSSMALCGLVLWSGLQGWFAAGMTFVLFALFRSL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGGLGSAAPPAVQAYVAARTDPDQRTQALSLVSSSFGLGTVIGPAIAPFFILPVVGLAGP HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LLVFALIGLAVLIALRWRLPNDVPRFAARGSIMSYPTTGASSQAATDEDDEQTSDRSASE HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCC PQPLRWTDTRVRPWLFAGFLGGQAQAMMLGVIGFLILDRLNLRLRPDEGAAMTGIVLMAG CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH AFATLLSQWGLIPLLKMSPRTAVLGGAALGGAGTLLTGLSYDFHGIVIGFALASLGFGLF HHHHHHHHCCCCEEEECCCCHHEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH RPGFTAGASLAVPRRDQGGVAGMTASINGSAYIVSPAIGVLVYNWHPIVAYGLMAGFCGW CCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHH LVLWGWAALRLDQPVRDRTH HHHHHHHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA