| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is epsC [H]
Identifier: 103487070
GI number: 103487070
Start: 1660411
End: 1662372
Strand: Reverse
Name: epsC [H]
Synonym: Sala_1585
Alternate gene names: 103487070
Gene position: 1662372-1660411 (Counterclockwise)
Preceding gene: 103487071
Following gene: 103487069
Centisome position: 49.69
GC content: 60.19
Gene sequence:
>1962_bases GTGTTTGAACGATTCTTCACTGATGCTTCGACCCAAATGATCACGTTCGCTGCGCGTATGCTTTTCTGGCCGCGTTGGGG AAAGCTGCTGCTTGTTCTCGTTTGCGACGCGATTTTGGGACTGGTAGCGTCCGCGATGGCCTTTTCCATTCGGTTGGGCG AATGGAGTTCCGATGACTGGCCGGTCCTGCGCTTTGGCCTCACCATGTTGTTGCTATGGTTTCCGATTGCCTTTTGGCGC GGGATCTATTCGGCCATATTTCGATACGCCGGTCGCGGGGTATTGATCTCGCTGGCGGTGGCCGTCGCCATGATGACGGT GCCGCTGATCGTCATCTATATGTATGTCGGTTATCCAGGTGTGCCTCGGACGATCGCCATTCTCGGCCCGATCCTGTTCC TGCTGCTTATGGGAGTCGCGCGGATCGTCGGCCGCTATGTGCTGGTGGATCTTTTCCATTCGCGTGACTTTGTGGGGCGC GAGCGGAACGTGCTCATCTATGGTGCCGGCACGACCGGTCAGCGATTGGCAGCATCTTTGAGTTCCGAAGGCGGCCTGAG GGTTGCGGGCTTTCTTGACGATGATCGTGACAAGCGGGGCAAGCGAATAGACGGTGCCCGCATCTTTCACAGCGACGATA TCGAAAGCGTGCTGAATCAGCTCGGCGTCACCGACATCGTTCTGGCGATGACGCAGGTCGGCGATGAGCGGCGCAAGCAG ATCATCCGGAATCTGGCGCGGTTCAGCATAAACGTCCAGATGCTTCCACCCGTCAGGGACATTCTTGAAGGCAAGATTTC GGCAAGCGCCATCCGTCCGATAGAGGTCGAGGATCTGTTGGGTCGCCCGCCGGTGGCACCCGACCGGGAATTGTTGTCGC GGTCCGTCAAGGGCAAGCATGTGATGGTAACCGGCGCCGGCGGTTCGATCGGCAGCGAATTGTGCCGACAGATACTACGG CTGGCACCGCACTCGCTCACCCTCGTCGAATCCAGTGAGTTTTCCCTCTTCAGGCTTCAAAACGAACTGGAAGCGATCCT CGATCGGCTCCCCGACGGTATCCGGCCCCTTCTTCGGGCGAAATTGTCGAATGTTGCGGATGCCGCAGCGGTGGAGCGCC TGTTCGCTGATGAGGCGCCCGACACCATCTATCATGCCGCGGCGTACAAGCATGTGCCGCTGCTGGAGGAGAACCCGCTT GACGGCGTCGCCAACAATATCCGCGGCACACGCAACATGGCCGAGATGGCCGTCAAAAAGGGTGTCGGTCGCTTTATTCT GATCAGCACCGACAAGGCCGTGCGTCCTCCGAACGTGATGGGGGCCAGCAAACGCGTCTGCGAGATGCTGCTGCAGGACA TGAGCCGGTCGCGGAAGCCCGACGGCACCATTTTCTCGATGGTTCGCTTCGGCAACGTGCTGGGTTCGAGCGGATCGGTC GTTCCGACCTTTCGACAACAGATCGAACGCGGCGGCCCGGTGACGGTGACCCACCGCGATGTTACACGCTATTTCATGAC GATCCCCGAAGCGGCCGAGCTGGTGATCCAGGCAGGCAGCATGGCGACGGGCGGCGAAGTGTTCCTGCTCGATATGGGGG AGCCGGTGCGCATCTGGGACCTCGCCGAAACCATGGTGCGGCTGTCCGGCCTTACGATCCGTTCGTCCGCCAACCCCGGT GGCAGCATCGAGATCGTCGAGCGCGGGTTGCGCAAGGGCGAAAAATTGTTCGAGGAACTTCTGGTCGGCGAGGAATCGCA GCCCACCGCGCATCCGCGGATCATGCAGGCGCGCGAAGAATGTGTCAGCCACGAGTGCCTTTATGAATATCTGACGGCAA TCGAGGCCGCGATTGCGGCGGCCGATCCCCGTGGTTGCCGAGCCGCATTGAAACGGCTAGTGCCCACCCTGCACGATCAG TCCCCAGCAACCGTCCCCGCGCCGGAACATTCAACTAGATGA
Upstream 100 bases:
>100_bases TACGATAGTGCGGGTTCTGGATCGCCGCAGCATTTCGCATTGATGTTTGCACTTGAAGATTTGGATCTCCAATCTTTTCA TCCCGCGCTGAGGTCTGGAC
Downstream 100 bases:
>100_bases AAAAAAATATCTTTCGTTCGAGTTCGGCGCCGGAACTGGTCCTGGTCCTGATCCTGGTGGCCGCGCTGATCCTGGGAGGC AGCGGCCGCGACGATGTGAC
Product: polysaccharide biosynthesis protein CapD
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 653; Mature: 653
Protein sequence:
>653_residues MFERFFTDASTQMITFAARMLFWPRWGKLLLVLVCDAILGLVASAMAFSIRLGEWSSDDWPVLRFGLTMLLLWFPIAFWR GIYSAIFRYAGRGVLISLAVAVAMMTVPLIVIYMYVGYPGVPRTIAILGPILFLLLMGVARIVGRYVLVDLFHSRDFVGR ERNVLIYGAGTTGQRLAASLSSEGGLRVAGFLDDDRDKRGKRIDGARIFHSDDIESVLNQLGVTDIVLAMTQVGDERRKQ IIRNLARFSINVQMLPPVRDILEGKISASAIRPIEVEDLLGRPPVAPDRELLSRSVKGKHVMVTGAGGSIGSELCRQILR LAPHSLTLVESSEFSLFRLQNELEAILDRLPDGIRPLLRAKLSNVADAAAVERLFADEAPDTIYHAAAYKHVPLLEENPL DGVANNIRGTRNMAEMAVKKGVGRFILISTDKAVRPPNVMGASKRVCEMLLQDMSRSRKPDGTIFSMVRFGNVLGSSGSV VPTFRQQIERGGPVTVTHRDVTRYFMTIPEAAELVIQAGSMATGGEVFLLDMGEPVRIWDLAETMVRLSGLTIRSSANPG GSIEIVERGLRKGEKLFEELLVGEESQPTAHPRIMQAREECVSHECLYEYLTAIEAAIAAADPRGCRAALKRLVPTLHDQ SPATVPAPEHSTR
Sequences:
>Translated_653_residues MFERFFTDASTQMITFAARMLFWPRWGKLLLVLVCDAILGLVASAMAFSIRLGEWSSDDWPVLRFGLTMLLLWFPIAFWR GIYSAIFRYAGRGVLISLAVAVAMMTVPLIVIYMYVGYPGVPRTIAILGPILFLLLMGVARIVGRYVLVDLFHSRDFVGR ERNVLIYGAGTTGQRLAASLSSEGGLRVAGFLDDDRDKRGKRIDGARIFHSDDIESVLNQLGVTDIVLAMTQVGDERRKQ IIRNLARFSINVQMLPPVRDILEGKISASAIRPIEVEDLLGRPPVAPDRELLSRSVKGKHVMVTGAGGSIGSELCRQILR LAPHSLTLVESSEFSLFRLQNELEAILDRLPDGIRPLLRAKLSNVADAAAVERLFADEAPDTIYHAAAYKHVPLLEENPL DGVANNIRGTRNMAEMAVKKGVGRFILISTDKAVRPPNVMGASKRVCEMLLQDMSRSRKPDGTIFSMVRFGNVLGSSGSV VPTFRQQIERGGPVTVTHRDVTRYFMTIPEAAELVIQAGSMATGGEVFLLDMGEPVRIWDLAETMVRLSGLTIRSSANPG GSIEIVERGLRKGEKLFEELLVGEESQPTAHPRIMQAREECVSHECLYEYLTAIEAAIAAADPRGCRAALKRLVPTLHDQ SPATVPAPEHSTR >Mature_653_residues MFERFFTDASTQMITFAARMLFWPRWGKLLLVLVCDAILGLVASAMAFSIRLGEWSSDDWPVLRFGLTMLLLWFPIAFWR GIYSAIFRYAGRGVLISLAVAVAMMTVPLIVIYMYVGYPGVPRTIAILGPILFLLLMGVARIVGRYVLVDLFHSRDFVGR ERNVLIYGAGTTGQRLAASLSSEGGLRVAGFLDDDRDKRGKRIDGARIFHSDDIESVLNQLGVTDIVLAMTQVGDERRKQ IIRNLARFSINVQMLPPVRDILEGKISASAIRPIEVEDLLGRPPVAPDRELLSRSVKGKHVMVTGAGGSIGSELCRQILR LAPHSLTLVESSEFSLFRLQNELEAILDRLPDGIRPLLRAKLSNVADAAAVERLFADEAPDTIYHAAAYKHVPLLEENPL DGVANNIRGTRNMAEMAVKKGVGRFILISTDKAVRPPNVMGASKRVCEMLLQDMSRSRKPDGTIFSMVRFGNVLGSSGSV VPTFRQQIERGGPVTVTHRDVTRYFMTIPEAAELVIQAGSMATGGEVFLLDMGEPVRIWDLAETMVRLSGLTIRSSANPG GSIEIVERGLRKGEKLFEELLVGEESQPTAHPRIMQAREECVSHECLYEYLTAIEAAIAAADPRGCRAALKRLVPTLHDQ SPATVPAPEHSTR
Specific function: Involved in biofilm formation [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 71955; Mature: 71955
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFERFFTDASTQMITFAARMLFWPRWGKLLLVLVCDAILGLVASAMAFSIRLGEWSSDDW CCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC PVLRFGLTMLLLWFPIAFWRGIYSAIFRYAGRGVLISLAVAVAMMTVPLIVIYMYVGYPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VPRTIAILGPILFLLLMGVARIVGRYVLVDLFHSRDFVGRERNVLIYGAGTTGQRLAASL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHH SSEGGLRVAGFLDDDRDKRGKRIDGARIFHSDDIESVLNQLGVTDIVLAMTQVGDERRKQ CCCCCEEEEECCCCCHHHCCCCCCCCEEECCCCHHHHHHHHCHHHHHHHHHHCCHHHHHH IIRNLARFSINVQMLPPVRDILEGKISASAIRPIEVEDLLGRPPVAPDRELLSRSVKGKH HHHHHHHHEEEEEECCCHHHHHHCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHCCCCCE VMVTGAGGSIGSELCRQILRLAPHSLTLVESSEFSLFRLQNELEAILDRLPDGIRPLLRA EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHH KLSNVADAAAVERLFADEAPDTIYHAAAYKHVPLLEENPLDGVANNIRGTRNMAEMAVKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH GVGRFILISTDKAVRPPNVMGASKRVCEMLLQDMSRSRKPDGTIFSMVRFGNVLGSSGSV CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC VPTFRQQIERGGPVTVTHRDVTRYFMTIPEAAELVIQAGSMATGGEVFLLDMGEPVRIWD CHHHHHHHHCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHH LAETMVRLSGLTIRSSANPGGSIEIVERGLRKGEKLFEELLVGEESQPTAHPRIMQAREE HHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH CVSHECLYEYLTAIEAAIAAADPRGCRAALKRLVPTLHDQSPATVPAPEHSTR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MFERFFTDASTQMITFAARMLFWPRWGKLLLVLVCDAILGLVASAMAFSIRLGEWSSDDW CCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC PVLRFGLTMLLLWFPIAFWRGIYSAIFRYAGRGVLISLAVAVAMMTVPLIVIYMYVGYPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VPRTIAILGPILFLLLMGVARIVGRYVLVDLFHSRDFVGRERNVLIYGAGTTGQRLAASL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHH SSEGGLRVAGFLDDDRDKRGKRIDGARIFHSDDIESVLNQLGVTDIVLAMTQVGDERRKQ CCCCCEEEEECCCCCHHHCCCCCCCCEEECCCCHHHHHHHHCHHHHHHHHHHCCHHHHHH IIRNLARFSINVQMLPPVRDILEGKISASAIRPIEVEDLLGRPPVAPDRELLSRSVKGKH HHHHHHHHEEEEEECCCHHHHHHCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHCCCCCE VMVTGAGGSIGSELCRQILRLAPHSLTLVESSEFSLFRLQNELEAILDRLPDGIRPLLRA EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHH KLSNVADAAAVERLFADEAPDTIYHAAAYKHVPLLEENPLDGVANNIRGTRNMAEMAVKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH GVGRFILISTDKAVRPPNVMGASKRVCEMLLQDMSRSRKPDGTIFSMVRFGNVLGSSGSV CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC VPTFRQQIERGGPVTVTHRDVTRYFMTIPEAAELVIQAGSMATGGEVFLLDMGEPVRIWD CHHHHHHHHCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHH LAETMVRLSGLTIRSSANPGGSIEIVERGLRKGEKLFEELLVGEESQPTAHPRIMQAREE HHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH CVSHECLYEYLTAIEAAIAAADPRGCRAALKRLVPTLHDQSPATVPAPEHSTR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]